Browse Element(s) Details


OsAffx.20073.1.S1_at

Description tigr:9640.m04055
TID=OsAffx.20073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4142011/11lectin protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20073.1.S1_at--112--811Chr12:25629413..25629437 (25 bp)
ATGGGAGGATTATTGACGCCGCCGA
LOC_Os12g41420
OsAffx.20073.1.S1_at--107--7651Chr12:25629415..25629439 (25 bp)
GGGAGGATTATTGACGCCGCCGACC
LOC_Os12g41420
OsAffx.20073.1.S1_at--1116--871Chr12:25629526..25629550 (25 bp)
AGGCCAACGATTAGGCAGGCTGTCA
LOC_Os12g41420
OsAffx.20073.1.S1_at--20--911Chr12:25629542..25629566 (25 bp)
AGGCTGTCAGTGTGCTGCGAGGCGA
LOC_Os12g41420
OsAffx.20073.1.S1_at--258--7731Chr12:25629600..25629624 (25 bp)
GGTGGCAACGTTCCTGTCCCCAGTA
LOC_Os12g41420
OsAffx.20073.1.S1_at--118--5151Chr12:25629604..25629628 (25 bp)
GCAACGTTCCTGTCCCCAGTAGATG
LOC_Os12g41420
OsAffx.20073.1.S1_at--472--9271Chr12:25629611..25629635 (25 bp)
TCCTGTCCCCAGTAGATGCTTTCAA
LOC_Os12g41420
OsAffx.20073.1.S1_at--652--8711Chr12:25629614..25629638 (25 bp)
TGTCCCCAGTAGATGCTTTCAACTA
LOC_Os12g41420
OsAffx.20073.1.S1_at--1076--9071Chr12:25629627..25629651 (25 bp)
TGCTTTCAACTACACATCTTCATAT
LOC_Os12g41420
OsAffx.20073.1.S1_at--413--9691Chr12:25629632..25629656 (25 bp)
TCAACTACACATCTTCATATGTGAC
LOC_Os12g41420
OsAffx.20073.1.S1_at--994--8951Chr12:25629653..25629677 (25 bp)
TGACAGGGAACACCAACACCAGCAC
LOC_Os12g41420
Target Sequence 
ATGGGAGGATTATTGACGCCGCCGACCACCGGCTGGGCGGCGAGTTCAACGGCGAGGAGATGGAGGCTGTCATGGTTGTC
GGGCTCTGGTGCGCGCACCCTGACCGAAGCCTGAGGCCAACGATTAGGCAGGCTGTCAGTGTGCTGCGAGGCGAGGTGCC
GCCGCCGAGCCTCCCGACGAGGATGCCGGTGGCAACGTTCCTGTCCCCAGTAGATGCTTTCAACTACACATCTTCATATG
TGACAGGGAACACCAACACCAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis