Browse Element(s) Details


OsAffx.20135.1.S1_at

Description gb:NM_197737.1
DB_XREF= gi:37536833
TID=OsAffx.20135.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0042H09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4109011/11hypothetical protein
LOC_Os01g659101/11Apocytochrome F, C-terminal family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009775biological_processphotosynthetic electron transport in cytochrome b6/f
GO:0009512cellular_componentcytochrome b6f complex
GO:0045158molecular_functionelectron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20135.1.S1_at--634--3951Chr10:21737597..21737621 (25 bp)
CGCGAGTGGCAAAGACCCGGGAGTG
LOC_Os10g41090
OsAffx.20135.1.S1_at--930--7551Chr10:21737439..21737463 (25 bp)
GGGCCACGAGAAACGGCCGCGTCCT
LOC_Os10g41090
OsAffx.20135.1.S1_at--621--4151Chr10:21737307..21737331 (25 bp)
CGCGCCCACGAACGCATAAGGGCTG
LOC_Os10g41090
OsAffx.20135.1.S1_at--244--4971Chr10:21737294..21737318 (25 bp)
GCATAAGGGCTGTGCGTCTCGTCAC
LOC_Os10g41090
OsAffx.20135.1.S1_at--1058--2871Chr10:21737290..21737314 (25 bp)
AAGGGCTGTGCGTCTCGTCACCGGA
LOC_Os10g41090
OsAffx.20135.1.S1_at--777--9391Chr10:21737276..21737300 (25 bp)
TCGTCACCGGACTCATGTCGGCATC
LOC_Os10g41090
OsAffx.20135.1.S1_at--685--4671Chr10:21737163..21737187 (25 bp)
GCGGTGGTACCGCTGATGGACGCGG
LOC_Os10g41090
OsAffx.20135.1.S1_at--1115--8631Chr10:21737094..21737118 (25 bp)
TGGGAGGCATCTGTGTCGAGCATTC
LOC_Os10g41090
OsAffx.20135.1.S1_at--83--6211Chr10:21737091..21737115 (25 bp)
GAGGCATCTGTGTCGAGCATTCTCC
LOC_Os10g41090
OsAffx.20135.1.S1_at--240--491Chr10:21737086..21737110 (25 bp)
ATCTGTGTCGAGCATTCTCCTGCTG
LOC_Os10g41090
OsAffx.20135.1.S1_at--1065--1535Chr07:24813092..24813517 (25 bp)
AGCATTCTCCTGCTGGTTGCCGAGG
NONE
Target Sequence 
CGCGAGTGGCAAAGACCCGGGAGTGGCACTGGAGCGGCGACAGCGGCGTGCGCGCCAGGGCCAAAGCGGCGACGGCGGCG
TGCGTGCAAGGGCCGGAGCAGCGGCGGCGGCGGAGATCGAGGCCGCCGTGGAAGGTTGGCCGTCGGGAGGAAGAAAACGG
GCCACGAGAAACGGCCGCGTCCTCGCCATCCTCGGCCTCGCCACCCTCGGCCCCGCCACCGCACTATCCACCGCTGCGCT
CCACGCCTTCTCTGCCGGCCACGACGCACCCGCCTCTGCCGTTCTCCCGCCGCGCCCACGAACGCATAAGGGCTGTGCGT
CTCGTCACCGGACTCATGTCGGCATCCTCTCGAAGATGGCAGCATCCGACGGTGGCTTCTTCTGCACCTGCGGCGACGGC
GTTGAAAGTGGGAGGAGCAGCGCGGGCGGGGGAGGCGGTGGTACCGCTGATGGACGCGGTCAGCGTGCCGAGCCGGCCGA
CAACGACGCGACCACATGGGAGTTGGGAGGCATCTGTGTCGAGCATTCTCCTGCTGGTTGCCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis