Browse Element(s) Details


OsAffx.20154.1.S1_at

Description tigr:9638.m03617
TID=OsAffx.20154.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3994010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39930Os.46548.1.S1_at11/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39930Os.46548.2.S1_x_at9/1110+21038699..21043415Cytochrome P450 family protein, expressed
LOC_Os10g39932NANA10+21044574..21045131hypothetical protein
LOC_Os10g39934OsAffx.29376.1.S1_x_at1/1110+21049526..21050406hypothetical protein
LOC_Os10g39936NANA10+21057126..21057812Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39940OsAffx.20154.1.S1_at10/1110+21058544..21059714hypothetical protein
LOC_Os10g39940Os.13877.1.S1_at3/1110+21058544..21059714hypothetical protein
LOC_Os10g39950Os.23246.1.A1_at4/1110+21060140..21069846Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os10g39970Os.51008.1.S1_at11/1110+21077244..21078300Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20154.1.S1_at--985--7811NONE
GGTCATCCTCCAGGCTTTTGCAAGA
NONE
OsAffx.20154.1.S1_at--19--4351Chr10:21059137..21059157 (21 bp)
CCAGGCTTTTGCAAGATCAATGCTA
LOC_Os10g39940
OsAffx.20154.1.S1_at--331--2811Chr10:21059145..21059169 (25 bp)
AAGATCAATGCTAGAGGCTCCACTA
LOC_Os10g39940
OsAffx.20154.1.S1_at--78--9091Chr10:21059153..21059177 (25 bp)
TGCTAGAGGCTCCACTATTTCATTG
LOC_Os10g39940
OsAffx.20154.1.S1_at--200--1331Chr10:21059157..21059181 (25 bp)
AGAGGCTCCACTATTTCATTGCAAA
LOC_Os10g39940
OsAffx.20154.1.S1_at--625--2291Chr10:21059180..21059615 (25 bp)
AAATGTAGCAGTGGGCAAAGCACCA
LOC_Os10g39940
OsAffx.20154.1.S1_at--583--5131Chr10:21059610..21059629 (20 bp)
GCAAAGCACCACATGGTCAGCCGTT
LOC_Os10g39940
OsAffx.20154.1.S1_at--904--2111Chr10:21059615..21059639 (25 bp)
ACATGGTCAGCCGTTGACAGGAGCA
LOC_Os10g39940
OsAffx.20154.1.S1_at--224--2131Chr10:21059631..21059655 (25 bp)
ACAGGAGCAGGAATGCACAATGCCA
LOC_Os10g39940
OsAffx.20154.1.S1_at--593--931Chr10:21059639..21059663 (25 bp)
AGGAATGCACAATGCCAAGAAGGGC
LOC_Os10g39940
OsAffx.20154.1.S1_at--838--2871Chr10:21059658..21059682 (25 bp)
AAGGGCCAGGCGACAACGATCGCCG
LOC_Os10g39940
Target Sequence 
GGTCATCCTCCAGGCTTTTGCAAGATCAATGCTAGAGGCTCCACTATTTCATTGCAAAATGTAGCAGTGGGCAAAGCACC
ACATGGTCAGCCGTTGACAGGAGCAGGAATGCACAATGCCAAGAAGGGCCAGGCGACAACGATCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis