Browse Element(s) Details


OsAffx.20160.1.S1_at

Description gb:NM_197587.1
DB_XREF= gi:37536533
TID=OsAffx.20160.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) ubiquitin-like protein (OSJNBb0015I11.6), mRNA.
PROD=ubiquitin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3959011/11Nedd8-like protein RUB3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0045116biological_processprotein neddylation
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20160.1.S1_at--787--4151Chr10:20833278..20833302 (25 bp)
CGCCGCAGCAGACGCTGATCTACGG
LOC_Os10g39590
OsAffx.20160.1.S1_at--155--4131Chr10:20833281..20833305 (25 bp)
CGCAGCAGACGCTGATCTACGGCGG
LOC_Os10g39590
OsAffx.20160.1.S1_at--179--2111Chr10:20833323..20833347 (25 bp)
ACATGACCGCCGAGATGTGCGACCT
LOC_Os10g39590
OsAffx.20160.1.S1_at--183--691Chr10:20833325..20833349 (25 bp)
ATGACCGCCGAGATGTGCGACCTCA
LOC_Os10g39590
OsAffx.20160.1.S1_at--570--8931Chr10:20833326..20833350 (25 bp)
TGACCGCCGAGATGTGCGACCTCAG
LOC_Os10g39590
OsAffx.20160.1.S1_at--803--5811Chr10:20833327..20833351 (25 bp)
GACCGCCGAGATGTGCGACCTCAGG
LOC_Os10g39590
OsAffx.20160.1.S1_at--580--4511Chr10:20833331..20833355 (25 bp)
GCCGAGATGTGCGACCTCAGGCATG
LOC_Os10g39590
OsAffx.20160.1.S1_at--568--4231Chr10:20833332..20833356 (25 bp)
CCGAGATGTGCGACCTCAGGCATGG
LOC_Os10g39590
OsAffx.20160.1.S1_at--330--1311Chr10:20833335..20833359 (25 bp)
AGATGTGCGACCTCAGGCATGGCTC
LOC_Os10g39590
OsAffx.20160.1.S1_at--771--6251Chr10:20833336..20833360 (25 bp)
GATGTGCGACCTCAGGCATGGCTCC
LOC_Os10g39590
OsAffx.20160.1.S1_at--976--8691Chr10:20833338..20833362 (25 bp)
TGTGCGACCTCAGGCATGGCTCCGA
LOC_Os10g39590
Target Sequence 
CGCCGCAGCAGACGCTGATCTACGGCGGCAGGCAGCTCGCCGACGACATGACCGCCGAGATGTGCGACCTCAGGCATGGC
TCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis