Browse Element(s) Details


OsAffx.2025.1.S1_x_at

Description tigr:9629.m01722
TID=OsAffx.2025.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1726010/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17240Os.435.1.S1_at11/111+9910168..9914082Major Facilitator Superfamily protein, expressed
LOC_Os01g17250Os.50964.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17250Os.436.1.S1_at11/111+9914371..9918373BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os01g17260Os.439.1.S1_at11/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17260OsAffx.2025.1.S1_x_at10/111+9925734..9932727Transcription factor HBP-1b, putative, expressed
LOC_Os01g17279Os.32656.1.S1_at11/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17279Os.40082.1.A1_x_at7/111+9933628..9944713exonuclease family protein, expressed
LOC_Os01g17300Os.30881.3.S1_x_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17300Os.30881.3.S1_at11/111+9950887..9951870hypothetical protein
LOC_Os01g17310NANA1+9953822..9955628retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2025.1.S1_x_at--697--9771Chr01:9931245..9931269 (25 bp)
TAAGGTCTGCAGTCAATGCTCATGC
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--860--691Chr01:9931278..9931302 (25 bp)
ATGAGCTCCGTGGTGTTGTTGACAA
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--592--6571Chr01:9931425..9931449 (25 bp)
GATTCCGACCATCCGAGCTTTTAAA
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--103--2351NONE
AAAGCTTGAACCTCTCACTGAGCAG
NONE
OsAffx.2025.1.S1_x_at--318--5071Chr01:9931838..9931862 (25 bp)
GCAGCTGTCAGGGATAGCCAACCTT
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--1015--2631Chr01:9931857..9931881 (25 bp)
AACCTTCAGCAGTCTTCACAACAAG
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--41--8271Chr01:9931928..9931952 (25 bp)
GGCAGAAACATTGGCTGGGTCTCTT
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--259--7811Chr01:9931945..9931969 (25 bp)
GGTCTCTTGGTTCTTCTGGATCAAC
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--196--10771Chr01:9932029..9932049 (21 bp)
TTGAGAATTTCCTTCGCCAGGCTGA
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--817--4691Chr01:9932221..9932245 (25 bp)
GCGGCAGCAGACTCTTCAACAGATG
LOC_Os01g17260
OsAffx.2025.1.S1_x_at--215--6471Chr01:9932290..9932314 (25 bp)
GATAAGCGATTACTCTTCGCGGCTT
LOC_Os01g17260
Target Sequence 
TAAGGTCTGCAGTCAATGCTCATGCAGGTGATAATGAGCTCCGTGGTGTTGTTGACAAGATCATGTCACACTATGAGGAG
ATTTTCAAGCAGAAAGGAAATGCGGCCAAAGCAGATGTCTTTCATGTGTTATCAGGCATGTGGAAGACACCAGCTGAGAG
GTGTTTCTTGTGGCTAGGAGGATTCCGACCATCCGAGCTTTTAAAGCTTGAACCTCTCACTGAGCAGCAGCTGTCAGGGA
TAGCCAACCTTCAGCAGTCTTCACAACAAGCTGAAGATGCTCTTTCACAAGGAATGGAGGCCCTTCAGCAGTCCTTGGCA
GAAACATTGGCTGGGTCTCTTGGTTCTTCTGGATCAACGGGAAACGTGGCAAACTACATGGGCCAAATGGCAATGGCCAT
GGGGAAGCTTGGGACCCTTGAGAATTTCCTTCGCCAGGCTGACAACCTGCGGCAGCAGACTCTTCAACAGATGCAAAGGA
TACTGACCACTAGGCAGTCTGCCCGTGCGCTTCTTGTGATAAGCGATTACTCTTCGCGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2025.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis