Browse Element(s) Details


OsAffx.20289.1.S1_at

Description tigr:9638.m02743
TID=OsAffx.20289.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3170011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein
LOC_Os10g31680Os.9180.1.S1_at11/1110+16278418..16279130expressed protein
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein
LOC_Os10g31710Os.46829.1.S1_at2/1110+16291738..16292313hypothetical protein
LOC_Os10g31710Os.46669.1.A1_at1/1110+16291738..16292313hypothetical protein
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein
LOC_Os10g31730Os.46669.1.A1_at7/1110+16305109..16305924expressed protein
LOC_Os10g31740NANA10+16309565..16311322hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20289.1.S1_at--784--2571Chr10:16287466..16287490 (25 bp)
AACGGATCGCGGGAACACGTGACCG
LOC_Os10g31700
OsAffx.20289.1.S1_at--116--7631Chr10:16287456..16287480 (25 bp)
GGGAACACGTGACCGCCATCGATGC
LOC_Os10g31700
OsAffx.20289.1.S1_at--121--1811Chr10:16287445..16287469 (25 bp)
ACCGCCATCGATGCCGACATTATGA
LOC_Os10g31700
OsAffx.20289.1.S1_at--503--3591Chr10:16287428..16287452 (25 bp)
CATTATGATGCAAGGCTGTCGTGGT
LOC_Os10g31700
OsAffx.20289.1.S1_at--337--7811Chr10:16287403..16287427 (25 bp)
GGTCGTATCCATGGTTTTGCTCCTC
LOC_Os10g31700
OsAffx.20289.1.S1_at--989--10391Chr10:16287389..16287413 (25 bp)
TTTTGCTCCTCCTCGTATCATGTCT
LOC_Os10g31700
OsAffx.20289.1.S1_at--428--9631Chr10:16287372..16287396 (25 bp)
TCATGTCTCACCTGCACGGAGGGAA
LOC_Os10g31700
OsAffx.20289.1.S1_at--369--1911Chr10:16287357..16287381 (25 bp)
ACGGAGGGAAGGATGCACTACCACA
LOC_Os10g31700
OsAffx.20289.1.S1_at--225--3331Chr10:16287342..16287366 (25 bp)
CACTACCACAGGAGGCACCGGAGAG
LOC_Os10g31700
OsAffx.20289.1.S1_at--119--711Chr10:16287285..16287309 (25 bp)
ATGAGTGGCGACAACCACGTCGCTA
LOC_Os10g31700
OsAffx.20289.1.S1_at--223--2651Chr10:16287273..16287297 (25 bp)
AACCACGTCGCTACCTGTCGCGTTG
LOC_Os10g31700
Target Sequence 
AACGGATCGCGGGAACACGTGACCGCCATCGATGCCGACATTATGATGCAAGGCTGTCGTGGTGGTCGTATCCATGGTTT
TGCTCCTCCTCGTATCATGTCTCACCTGCACGGAGGGAAGGATGCACTACCACAGGAGGCACCGGAGAGCGCCGCACCGC
AAGCACCACCACAGGGCGATGATGAGTGGCGACAACCACGTCGCTACCTGTCGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis