Browse Element(s) Details


OsAffx.20293.2.S1_at

Description gb:NM_184720.1
DB_XREF= gi:34896529
TID=OsAffx.20293.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053G10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3550011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g512101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g322101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35454OsAffx.22715.1.S1_at11/113+19610652..19620093retrotransposon protein, putative, unclassified
LOC_Os03g35454OsAffx.13188.1.S1_at11/113+19610652..19620093retrotransposon protein, putative, unclassified
LOC_Os03g35470OsAffx.25364.1.S1_at11/113+19622200..19622580hypothetical protein
LOC_Os03g35480Os.46003.1.A1_at1/113+19624438..19626733Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35480Os.46003.1.A1_x_at1/113+19624438..19626733Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35490NANA3+19630702..19631565hypothetical protein
LOC_Os03g35500OsAffx.20293.2.S1_at11/113+19634182..19635136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35510NANA3+19636445..19636960hypothetical protein
LOC_Os03g35520OsAffx.22716.1.S1_at11/113+19640106..19641622hypothetical protein
LOC_Os03g35540OsAffx.10490.1.S1_at10/113+19645624..19652237retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20293.2.S1_at--904--9631Chr03:19634823..19634847 (25 bp)
TCAGAGGAGGGTTGGTTATTTTTCA
LOC_Os03g35500
OsAffx.20293.2.S1_at--771--67912Chr09:10539217..10539480 (25 bp)
GTTATTTTTCAAGGACAGCAGTTCA
NONE
OsAffx.20293.2.S1_at--1128--3398Chr07:17726092..17726339 (25 bp)
CAGCAGTTCAATTGTTCCCAGTCAG
NONE
OsAffx.20293.2.S1_at--14--1238Chr10:19887858..19887882 (25 bp)
AGTTCAATTGTTCCCAGTCAGGCGA
NONE
OsAffx.20293.2.S1_at--890--312Chr10:19887864..19887884 (21 bp)
ATTGTTCCCAGTCAGGCGAAATGTA
NONE
OsAffx.20293.2.S1_at--271--8372Chr04:11830406..11830430 (25 bp)
GGCGAAATGTATGACTACTCCTGTA
NONE
OsAffx.20293.2.S1_at--204--8032Chr04:11830515..11830535 (21 bp)
GGAGTTACGCCGGTCCTAGGTCACT
NONE
OsAffx.20293.2.S1_at--455--4492Chr04:11830519..11830543 (25 bp)
GCCGGTCCTAGGTCACTTGATGGAA
NONE
OsAffx.20293.2.S1_at--165--831Chr03:19635045..19635069 (25 bp)
ATGGAATTTTGAGGGACACCGGTGA
LOC_Os03g35500
OsAffx.20293.2.S1_at--190--891Chr03:19635069..19635093 (25 bp)
AGGCCAGGTCAACAGCTCAGCTTAG
LOC_Os03g35500
OsAffx.20293.2.S1_at--1152--1571Chr03:19635082..19635106 (25 bp)
AGCTCAGCTTAGAGAAGCAGCATCA
LOC_Os03g35500
Target Sequence 
TCAGAGGAGGGTTGGTTATTTTTCAAGGACAGCAGTTCAATTGTTCCCAGTCAGGCGAAATGTATGACTACTCCTGTAAG
GGGGAGTTACGCCGGTCCTAGGTCACTTGATGGAATTTTGAGGGACACCGGTGAGGCCAGGTCAACAGCTCAGCTTAGAG
AAGCAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20293.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis