Browse Element(s) Details


OsAffx.22715.1.S1_at

Description gb:NM_184725.1
DB_XREF= gi:34896539
GEN=OSJNBa0053G10.20
TID=OsAffx.22715.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0053G10.20), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3545411/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35400OsAffx.22713.1.S1_at11/113+19584478..19587341retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35420NANA3+19595804..19596343retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35430NANA3+19597406..19601830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35440Os.45173.1.S1_x_at3/113+19602119..19604247retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35440Os.38764.1.S1_x_at2/113+19602119..19604247retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35440Os.10731.2.A1_at1/113+19602119..19604247retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35454OsAffx.22715.1.S1_at11/113+19610652..19620093retrotransposon protein, putative, unclassified
LOC_Os03g35454OsAffx.13188.1.S1_at11/113+19610652..19620093retrotransposon protein, putative, unclassified
LOC_Os03g35470OsAffx.25364.1.S1_at11/113+19622200..19622580hypothetical protein
LOC_Os03g35480Os.46003.1.A1_at1/113+19624438..19626733Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35480Os.46003.1.A1_x_at1/113+19624438..19626733Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35490NANA3+19630702..19631565hypothetical protein
LOC_Os03g35500OsAffx.20293.2.S1_at11/113+19634182..19635136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35510NANA3+19636445..19636960hypothetical protein
LOC_Os03g35520OsAffx.22716.1.S1_at11/113+19640106..19641622hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22715.1.S1_at--791--6131Chr03:19611088..19611112 (25 bp)
GAGGTGTTTTTCATTTGCCAATTCT
LOC_Os03g35454
OsAffx.22715.1.S1_at--682--3111Chr03:19611047..19611071 (25 bp)
AATTTCCCAATTGTGCCATATGCAG
LOC_Os03g35454
OsAffx.22715.1.S1_at--302--71Chr03:19611015..19611039 (25 bp)
ATTGCTTTTCATGCAAGCCTCTAGG
LOC_Os03g35454
OsAffx.22715.1.S1_at--179--10091Chr03:19610994..19611018 (25 bp)
TAGGACTCTGCTTTTGGCCTTGAAA
LOC_Os03g35454
OsAffx.22715.1.S1_at--640--5591Chr03:19610919..19610943 (25 bp)
GAAATCTTGTCTGATCCCTTTGAAT
LOC_Os03g35454
OsAffx.22715.1.S1_at--820--3031Chr03:19610873..19610897 (25 bp)
AATCCTGCCCAGACTTTTGGTTGCT
LOC_Os03g35454
OsAffx.22715.1.S1_at--632--7631Chr03:19610843..19610867 (25 bp)
GGGACTTTGCCTTTCACTTATTTAG
LOC_Os03g35454
OsAffx.22715.1.S1_at--435--10211Chr03:19610825..19610849 (25 bp)
TATTTAGGCCTTCCTCTTAGCTGTT
LOC_Os03g35454
OsAffx.22715.1.S1_at--822--191Chr03:19610782..19610806 (25 bp)
ATTTCTCTCCTCTCACTGATTGGAT
LOC_Os03g35454
OsAffx.22715.1.S1_at--776--1471Chr03:19610753..19610777 (25 bp)
AGAATGCTTGTTGCAACCTCTGCTT
LOC_Os03g35454
OsAffx.22715.1.S1_at--306--1411Chr03:19610711..19610735 (25 bp)
AGACTCACTCTTGTCAACTCTGTTT
LOC_Os03g35454
Target Sequence 
GAGGTGTTTTTCATTTGCCAATTCTAATAAATGGGGATTGCAATTTCCCAATTGTGCCATATGCAGATGATACATTGCTT
TTCATGCAAGCCTCTAGGACTCTGCTTTTGGCCTTGAAAGCTTTGCTCAATACAGTTGCTTCATCAACTGGGTTAAAGGT
TAATTTTTCGAAATCTTGTCTGATCCCTTTGAATTTGGATGAGGACAAAGCTAACAATCCTGCCCAGACTTTTGGTTGCT
CCTTTGGGACTTTGCCTTTCACTTATTTAGGCCTTCCTCTTAGCTGTTCCAAGCCTAAGGTTATTGATTTCTCTCCTCTC
ACTGATTGGATTGAAAGAATGCTTGTTGCAACCTCTGCTTTTCTTTCCTATGGGGACAGACTCACTCTTGTCAACTCTGT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis