Browse Element(s) Details


OsAffx.20354.1.S1_at

Description gb:NM_196443.1
DB_XREF= gi:37534245
TID=OsAffx.20354.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0049A03.9), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2693011/11retrotransposon protein, putative, unclassified
LOC_Os03g408805/11retrotransposon protein, putative, unclassified
LOC_Os09g110305/11retrotransposon protein, putative, unclassified
LOC_Os05g028503/11retrotransposon protein, putative, unclassified
LOC_Os07g278203/11retrotransposon protein, putative, unclassified
LOC_Os08g032102/11retrotransposon protein, putative, unclassified
LOC_Os05g179702/11retrotransposon protein, putative, unclassified
LOC_Os10g330002/11retrotransposon protein, putative, unclassified
LOC_Os03g573802/11retrotransposon protein, putative, unclassified
LOC_Os08g428602/11retrotransposon protein, putative, unclassified
LOC_Os09g111102/11retrotransposon protein, putative, unclassified
LOC_Os06g255002/11retrotransposon protein, putative, unclassified
LOC_Os03g372401/11retrotransposon protein, putative, unclassified
LOC_Os01g393601/11retrotransposon protein, putative, unclassified
LOC_Os05g446701/11retrotransposon protein, putative, unclassified
LOC_Os10g042201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26890OsAffx.30553.1.S1_at10/1110+13810250..13811216hypothetical protein
LOC_Os10g26910Os.48948.1.S1_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910Os.48948.1.S1_x_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910OsAffx.26155.1.S1_x_at5/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26920OsAffx.22722.1.S1_x_at1/1110+13827358..13833264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g26930OsAffx.20354.1.S1_at11/1110+13833831..13836701retrotransposon protein, putative, unclassified
LOC_Os10g26940Os.37718.1.S1_at11/1110+13839897..13841440BURP domain containing protein, expressed
LOC_Os10g26950Os.46519.3.A1_at11/1110+13856100..13859737retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20354.1.S1_at--127--9151Chr10:13834561..13834585 (25 bp)
TGCGCGAAACAGAAAAACTTGCTAG
LOC_Os10g26930
OsAffx.20354.1.S1_at--883--4591Chr10:13834558..13834582 (25 bp)
GCGAAACAGAAAAACTTGCTAGGAA
LOC_Os10g26930
OsAffx.20354.1.S1_at--619--7031Chr10:13834389..13834413 (25 bp)
GTACAAGCTGCCAAAATATCCCAAC
LOC_Os10g26930
OsAffx.20354.1.S1_at--855--2211Chr10:13834387..13834411 (25 bp)
ACAAGCTGCCAAAATATCCCAACTA
LOC_Os10g26930
OsAffx.20354.1.S1_at--325--2075Chr09:6127272..6127399 (25 bp)
ACTTGGCTTTAAAGGCTCAATTCGA
LOC_Os09g11030
OsAffx.20354.1.S1_at--519--83315Chr10:16949941..16950068 (25 bp)
TGGCTTTAAAGGCTCAATTCGACGT
LOC_Os10g33000
OsAffx.20354.1.S1_at--1129--64717Chr10:16949942..16950069 (25 bp)
GGCTTTAAAGGCTCAATTCGACGTC
LOC_Os10g33000
OsAffx.20354.1.S1_at--740--1731Chr10:13833886..13833910 (25 bp)
ACCTCATTAGCGATGCGCAAAAATC
LOC_Os10g26930
OsAffx.20354.1.S1_at--625--10451Chr10:13833880..13833904 (25 bp)
TTAGCGATGCGCAAAAATCTGCCGA
LOC_Os10g26930
OsAffx.20354.1.S1_at--1099--1633Chr09:6127701..6127725 (25 bp)
AGCGATGCGCAAAAATCTGCCGATA
LOC_Os09g11030
OsAffx.20354.1.S1_at--799--4053Chr09:6127703..6127727 (25 bp)
CGATGCGCAAAAATCTGCCGATAAG
LOC_Os09g11030
Target Sequence 
TGCGCGAAACAGAAAAACTTGCTAGGAAGAATGAACATGATCTGAGGGATCGAATTGCTGAGCTCCAGGAATCCAATTTT
GAACTGAGTGGCTCATCAAAAGTACAAGCTGCCAAAATATCCCAACTAGAGAAGCAGATCCAAACTCTAGAAAATGACAA
GGCAGAGCTGGCAAGACAGAGAGACTTGGCTTTAAAGGCTCAATTCGACGTCCTGGTTGGCAAGATCAAAAAACTTGAAG
AAGCCCGGGATAAAGTCGCTAATGCCGCTACCCCACTCATCCAAGCCATGTTCTTCAATAACACCGGTCCGAGTACACTT
GATGCTTCTGAAATCTTCGACAAGCTGAGAGTTGCTCCGGATACATATTTCAAGGACATCAAAGAAGCTGGGAGTATGGG
AGCGAGTCTGGCGTTGGCGATGACCAAATCCCTTTATCCAAGGGTTGACGTTGATGCCATTGATGGCTTTGTAGACAGGA
CGAGCGAAGAAGCTGCTCTTGACCTCATTAGCGATGCGCAAAAATCTGCCGATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis