Browse Element(s) Details


OsAffx.30553.1.S1_at

Description tigr:9638.m02300
TID=OsAffx.30553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2689010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26870Os.27037.1.A1_at1/1110+13793700..13798666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26880Os.14491.2.S1_x_at4/1110+13801251..13804948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26880Os.47463.1.S1_x_at4/1110+13801251..13804948transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26890OsAffx.30553.1.S1_at10/1110+13810250..13811216hypothetical protein
LOC_Os10g26910Os.48948.1.S1_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910Os.48948.1.S1_x_at11/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26910OsAffx.26155.1.S1_x_at5/1110+13819013..13826258transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26920OsAffx.22722.1.S1_x_at1/1110+13827358..13833264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g26930OsAffx.20354.1.S1_at11/1110+13833831..13836701retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30553.1.S1_at--183--1871NONE
ACGAGGAGCTGGTAAGTGTTTCAAA
NONE
OsAffx.30553.1.S1_at--410--9771Chr10:13810370..13810394 (25 bp)
TAAGTGTTTCAAAGTAACCGGAGAT
LOC_Os10g26890
OsAffx.30553.1.S1_at--540--1751Chr10:13810354..13810378 (25 bp)
ACCGGAGATTCCCAAGTGGTTCGAT
LOC_Os10g26890
OsAffx.30553.1.S1_at--40--10651Chr10:13810346..13810370 (25 bp)
TTCCCAAGTGGTTCGATCAGAGGTC
LOC_Os10g26890
OsAffx.30553.1.S1_at--1147--1071Chr10:13810340..13810364 (25 bp)
AGTGGTTCGATCAGAGGTCCAGCCC
LOC_Os10g26890
OsAffx.30553.1.S1_at--1147--7891Chr10:13810337..13810361 (25 bp)
GGTTCGATCAGAGGTCCAGCCCCAA
LOC_Os10g26890
OsAffx.30553.1.S1_at--1017--7772Chr11:19679790..19679815 (24 bp)
GGTCCAGCCCCAACAACAACAGATG
NONE
OsAffx.30553.1.S1_at--960--2191Chr10:13810310..13810334 (25 bp)
ACAACAGATGGACAACGAAGGTGAT
LOC_Os10g26890
OsAffx.30553.1.S1_at--791--2591Chr10:13810297..13810321 (25 bp)
AACGAAGGTGATAGGGATGAGCTCC
LOC_Os10g26890
OsAffx.30553.1.S1_at--346--6311Chr10:13810282..13810306 (25 bp)
GATGAGCTCCGCAAGAAACCATTTG
LOC_Os10g26890
OsAffx.30553.1.S1_at--777--8911Chr10:13810280..13810304 (25 bp)
TGAGCTCCGCAAGAAACCATTTGAT
LOC_Os10g26890
Target Sequence 
ACGAGGAGCTGGTAAGTGTTTCAAAGTAACCGGAGATTCCCAAGTGGTTCGATCAGAGGTCCAGCCCCAACAACAACAGA
TGGACAACGAAGGTGATAGGGATGAGCTCCGCAAGAAACCATTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis