Browse Element(s) Details


OsAffx.20390.1.S1_x_at

Description gb:NM_196281.1
DB_XREF= gi:37533921
TID=OsAffx.20390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0061I18.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g010301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01010NANA4+1061..1836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01020NANA4+8705..8977hypothetical protein
LOC_Os04g01030Os.27691.1.S1_x_at3/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.30013.5.S1_x_at3/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.56292.1.S1_x_at2/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.27691.2.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030Os.56292.1.S1_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.20390.1.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.25778.1.S1_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01030OsAffx.25778.1.S1_x_at1/114+9980..20912retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01040NANA4+22177..28840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01050NANA4+31092..31774retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01060Os.14491.2.S1_x_at4/114+36079..45522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01060Os.47463.1.S1_x_at4/114+36079..45522transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20390.1.S1_x_at--1104--5791Chr10:12619896..12619920 (25 bp)
GACGCATGGGCTGAGCGGCAGCAGT
NONE
OsAffx.20390.1.S1_x_at--719--4691Chr10:12619925..12619949 (25 bp)
GCGGCAGAAGCAAGGCGACGCCAAC
NONE
OsAffx.20390.1.S1_x_at--979--5791Chr10:12619941..12620153 (25 bp)
GACGCCAACCAGAGGCCATACAATC
NONE
OsAffx.20390.1.S1_x_at--361--3251Chr10:12619946..12620158 (25 bp)
CAACCAGAGGCCATACAATCTAGGG
NONE
OsAffx.20390.1.S1_x_at--618--10031Chr10:12620154..12620177 (24 bp)
TAGGGGCGAACCCATGTCCCAAGTG
NONE
OsAffx.20390.1.S1_x_at--714--45117Chr10:12621517..12621541 (25 bp)
GCCGCCGTTGGGTTCGCAAGGTCAA
NONE
OsAffx.20390.1.S1_x_at--1068--8612Chr10:12621525..12621549 (25 bp)
TGGGTTCGCAAGGTCAAGGGCCACC
NONE
OsAffx.20390.1.S1_x_at--902--10592Chr10:12621529..12621553 (25 bp)
TTCGCAAGGTCAAGGGCCACCCCGT
NONE
OsAffx.20390.1.S1_x_at--17--4458Chr10:12621588..12621608 (21 bp)
GCCATTCCCACCGTGCGACGGGCAT
NONE
OsAffx.20390.1.S1_x_at--993--7293Chr10:12621600..12621716 (25 bp)
GTGCGACGGGCATTCCGGACCTCGT
NONE
OsAffx.20390.1.S1_x_at--398--5831Chr10:12622071..12622095 (25 bp)
GACCGGGAGCCTTGGGCCACTGACC
NONE
Target Sequence 
GACGCATGGGCTGAGCGGCAGCAGTGGCGGCGGCAGAAGCAAGGCGACGCCAACCAGAGGCCATACAATCTAGGGGCGAA
CCCATGTCCCAAGTGGGGCCCACCTGTCGGACCCGTCTCCCACCTCGCGCCGCGCCGCTGCGCCCGCAACCGCCGCCGTG
CCCACGCCTCCGCCTCCTCCGGGCCACGCTCGCCGCCGCACCGCGCCGTCGCCGCCGTTGGGTTCGCAAGGTCAAGGGCC
ACCCCGTCCACCCCTCCTTCGTCGAGGTTCGCCGCCGGAGCGCCATTCCCACCGTGCGACGGGCATTCCGGACCTCGTCC
GCCCGTCGCCGCCGTTTGCCCGTGGTCGCCGTCGCCGTTCGCCGTCGTCTTCCTCCGCACCGGCCACCCTTGGTCGCTGC
CGCCCGTCCGATCGGCCCTGGGGCGATCTGGGCCGTCGGTCCCGTGGACCGGCGGTGGACCACCCGCGTGGTCCCAGTGC
ACGGTGGACCGGGAGCCTTGGGCCACTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20390.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis