Browse Element(s) Details


OsAffx.20435.1.S1_at

Description gb:NM_196125.1
DB_XREF= gi:37533609
TID=OsAffx.20435.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJA1208D02.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2266011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22630Os.5353.1.S1_at11/1110+11426685..11428017expressed protein
LOC_Os10g22630OsAffx.6388.1.A1_x_at1/1110+11426685..11428017expressed protein
LOC_Os10g22640NANA10+11433620..11439775retrotransposon protein, putative, unclassified
LOC_Os10g22650Os.28943.1.S1_x_at1/1110+11440409..11443587transposon protein, putative, unclassified
LOC_Os10g22660OsAffx.20435.1.S1_at11/1110+11447754..11448221hypothetical protein
LOC_Os10g22670OsAffx.30501.1.S1_at10/1110+11448576..11449285hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_x_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.30502.1.S1_at11/1110+11451129..11451915hypothetical protein
LOC_Os10g22680OsAffx.22642.1.S1_x_at1/1110+11451129..11451915hypothetical protein
LOC_Os10g22690Os.52765.1.S1_at4/1110+11453165..11455525hypothetical protein
LOC_Os10g22700OsAffx.20433.1.S1_x_at11/1110+11460867..11461716expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_x_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.6736.1.S1_at11/1110+11464845..11466882expressed protein
LOC_Os10g22710OsAffx.28845.1.S1_x_at1/1110+11464845..11466882expressed protein
LOC_Os10g22720OsAffx.30503.1.S1_at11/1110+11469998..11473960hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20435.1.S1_at--873--1871Chr10:11448166..11448190 (25 bp)
ACGAGTGTGGTCTTTGTCAAGGCAA
LOC_Os10g22660
OsAffx.20435.1.S1_at--6--771Chr10:11448133..11448157 (25 bp)
ATGTCTTCGAGGAGAATCACGCCAT
LOC_Os10g22660
OsAffx.20435.1.S1_at--1081--3071Chr10:11448119..11448143 (25 bp)
AATCACGCCATGCTTGCCAACAAGG
LOC_Os10g22660
OsAffx.20435.1.S1_at--263--7251Chr10:11448033..11448057 (25 bp)
GTCCCTGCAGGTTACCGGCGACCAG
LOC_Os10g22660
OsAffx.20435.1.S1_at--585--5771Chr10:11447948..11447972 (25 bp)
GACGACCACCACATCAACAACGTAA
LOC_Os10g22660
OsAffx.20435.1.S1_at--351--9711Chr10:11447935..11447959 (25 bp)
TCAACAACGTAAACATCGCCCTGAA
LOC_Os10g22660
OsAffx.20435.1.S1_at--429--9231Chr10:11447909..11447933 (25 bp)
TCCTACAACTACAACATGGCCAATG
LOC_Os10g22660
OsAffx.20435.1.S1_at--108--1351Chr10:11447884..11447908 (25 bp)
AGAGTATCTTCAACAGTGGCCTCCT
LOC_Os10g22660
OsAffx.20435.1.S1_at--198--4551Chr10:11447859..11447883 (25 bp)
GCACCCTAACACTCAAGACTACATT
LOC_Os10g22660
OsAffx.20435.1.S1_at--81--9871Chr10:11447840..11447864 (25 bp)
TACATTTCGGGTTGCAAGGACCTTT
LOC_Os10g22660
OsAffx.20435.1.S1_at--170--7931Chr10:11447784..11447808 (25 bp)
GGATTGGCTTTCATCATTTGAGCTA
LOC_Os10g22660
Target Sequence 
ACGAGTGTGGTCTTTGTCAAGGCAAGAAGAACAATGTCTTCGAGGAGAATCACGCCATGCTTGCCAACAAGGTAGAAGCT
GGTGGCGCCTACCGCCACACCCCGAACGCATGGCGCTTCGCCTACCAGCCACCGTCCCTGCAGGTTACCGGCGACCAGCC
AGCCACTAGCACTGCACCGCAACCGGAGAAACAAATAACCATCAAGGACGACAACGACGACGACCACCACATCAACAACG
TAAACATCGCCCTGAACTCCTACAACTACAACATGGCCAATGAGAGTATCTTCAACAGTGGCCTCCTGCACCCTAACACT
CAAGACTACATTTCGGGTTGCAAGGACCTTTGGTATGGTCCATATGAAGACGATGAGAAGAAGGATTGGCTTTCATCATT
TGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis