Browse Element(s) Details


OsAffx.2051.1.S1_at

Description gb:NM_183755.1
DB_XREF= gi:34894637
GEN=P0028G04.18
TID=OsAffx.2051.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0028G04.18 (P0028G04.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g215708/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21536Os.45173.1.S1_x_at3/111+12026271..12032467retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21542OsAffx.22894.1.S1_at8/111+12035105..12035557retrotransposon protein, putative, unclassified
LOC_Os01g21550NANA1+12039758..12040204hypothetical protein
LOC_Os01g21560Os.37776.1.S1_at11/111+12050165..12051591esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g21570OsAffx.2051.1.S1_at8/111+12054836..12055227NA
LOC_Os01g21580Os.37776.1.S1_at1/111+12057202..12057519esterase/lipase/thioesterase family protein, putative
LOC_Os01g21590OsAffx.11145.1.S1_s_at11/111+12074114..12076082expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2051.1.S1_at--88--771Chr01:12055319..12055343 (25 bp)
ATGTCTCCCATGTTAGAGAGGTCCT
NONE
OsAffx.2051.1.S1_at--99--4291Chr01:12055297..12055321 (25 bp)
CCTAGGAAACCTACGTGTGCACGAA
NONE
OsAffx.2051.1.S1_at--910--1311Chr01:12055237..12055261 (25 bp)
AGATGGAGCTCAGCAGCCGGAGTTC
NONE
OsAffx.2051.1.S1_at--375--3651Chr01:12055189..12055213 (25 bp)
CTTCGGTGCAAGATCCTTTGGATTT
LOC_Os01g21570
OsAffx.2051.1.S1_at--38--3671Chr01:12055174..12055198 (25 bp)
CTTTGGATTTCTTGAGGGCTTTCGC
LOC_Os01g21570
OsAffx.2051.1.S1_at--545--7591Chr01:12055159..12055183 (25 bp)
GGGCTTTCGCAGAGGATTTCATGGT
LOC_Os01g21570
OsAffx.2051.1.S1_at--800--6251Chr01:12055131..12055155 (25 bp)
GATGGTGACGCAGTAGCTCGCAAAT
LOC_Os01g21570
OsAffx.2051.1.S1_at--873--9931Chr01:12055118..12055142 (25 bp)
TAGCTCGCAAATGGTGGTCGGGTTT
LOC_Os01g21570
OsAffx.2051.1.S1_at--954--2331Chr01:12054984..12055008 (25 bp)
AAAGAACATTTGCTCGGCATGGAGA
LOC_Os01g21570
OsAffx.2051.1.S1_at--395--1351Chr01:12054940..12054964 (25 bp)
AGAGTTGATGTCGAGCACAGCCTGA
LOC_Os01g21570
OsAffx.2051.1.S1_at--202--5751Chr01:12054917..12054941 (25 bp)
GACGTCGACGGAAGCCTTCGTCTTT
LOC_Os01g21570
Target Sequence 
ATGTCTCCCATGTTAGAGAGGTCCTAGGAAACCTACGTGTGCACGAAATCGACTTGGAGCTCACCAGAGAAGGAGGAATC
AAAGATGGAGCTCAGCAGCCGGAGTTCGAGAAGACGATGGCGATCTCCCTCTTCGGTGCAAGATCCTTTGGATTTCTTGA
GGGCTTTCGCAGAGGATTTCATGGTGGTGATGGTGACGCAGTAGCTCGCAAATGGTGGTCGGGTTTGGCCGANNANNTNN
TNTNNCCGTCACTGCAGTGGACGAAAAAAGATGGAGTCAAAAGAACATTTGCTCGGCATGGAGAGAGGAGTATGGAACGG
AAAAGAGTTGATGTCGAGCACAGCCTGACGTCGACGGAAGCCTTCGTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis