Browse Element(s) Details


OsAffx.20557.1.S1_at

Description gb:NM_195630.1
DB_XREF= gi:37532619
TID=OsAffx.20557.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053D03.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g171205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17100NANA10+8239422..8240808hypothetical protein
LOC_Os10g17110Os.40360.1.S1_x_at1/1110+8249273..8250175hypothetical protein
LOC_Os10g17120OsAffx.20557.1.S1_at5/1110+8263829..8264128hypothetical protein
LOC_Os10g17130OsAffx.8310.1.S1_x_at11/1110+8271430..8271816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17140OsAffx.286.1.S1_at11/1110+8273561..8274523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17150NANA10+8279707..8280960retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20557.1.S1_at--172--7571Chr10:8263861..8263885 (25 bp)
GGGCTTTCACCGCATCCGTGAGCGC
LOC_Os10g17120
OsAffx.20557.1.S1_at--188--8911Chr10:8263879..8263903 (25 bp)
TGAGCGCGAAGCACCGGTGGAGGCA
LOC_Os10g17120
OsAffx.20557.1.S1_at--44--6531Chr10:8263982..8264006 (25 bp)
GATTTGGACCCCCTTGGCCAGATCT
LOC_Os10g17120
OsAffx.20557.1.S1_at--324--1271Chr10:8264001..8264025 (25 bp)
AGATCTGGCGGCTGACGGCAGGGAC
LOC_Os10g17120
OsAffx.20557.1.S1_at--124--3351Chr10:8264034..8264058 (25 bp)
CACGTGCTGGCACGCGAGCAATGCC
LOC_Os10g17120
OsAffx.20557.1.S1_at--643--891Chr10:8264231..8264255 (25 bp)
AGGCCGTTGCGGTGCATGGAGGAGA
NONE
OsAffx.20557.1.S1_at--990--7771Chr10:8264289..8264313 (25 bp)
GGTGCGGGTAGTGCCGAGAGCTTTC
NONE
OsAffx.20557.1.S1_at--368--8991Chr10:8264400..8264424 (25 bp)
TGAAGCTGGCCAGTGGTTGGTGCCG
NONE
OsAffx.20557.1.S1_at--316--6631Chr10:8264415..8264439 (25 bp)
GTTGGTGCCGGTTCAGTGCCCATGA
NONE
OsAffx.20557.1.S1_at--544--7891Chr10:8264424..8264448 (25 bp)
GGTTCAGTGCCCATGAGCTGATGGA
NONE
OsAffx.20557.1.S1_at--610--4551Chr10:8264432..8264456 (25 bp)
GCCCATGAGCTGATGGAGGTTTCGA
NONE
Target Sequence 
GGGCTTTCACCGCATCCGTGAGCGCGAAGCACCGGTGGAGGCAGGCGAGGAGAAGGCGGCCGGCGGCAGGGTTGCAGCAG
CGGTGGCGGCGAGGCAGCGGCGGCCGTGGTGGGCACCGCCAGATTTGGACCCCCTTGGCCAGATCTGGCGGCTGACGGCA
GGGACGGCGGGCGCACGTGCTGGCACGCGAGCAATGCCAGCAGCCGGAGGNGNANNNNGNNNGNGGNANNNNGNNNNGGN
NNNNNNNGNNNNNNNNNNGGNNACGNNNACAGGCCGTTGCGGTGCATGGAGGAGAGGACGGCGTGGTGACATGGCCGGCG
ACGGCGGCGGTGCGGGTAGTGCCGAGAGCTTTCGGGAGCTGGCGGCAGGGAGGCCGGTGAAGCTGGCCAGTGGTTGGTGC
CGGTTCAGTGCCCATGAGCTGATGGAGGTTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis