Browse Element(s) Details


OsAffx.286.1.S1_at

Description gb:NM_195633.1
DB_XREF= gi:37532625
TID=OsAffx.286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053D03.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1714011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g268001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17110Os.40360.1.S1_x_at1/1110+8249273..8250175hypothetical protein
LOC_Os10g17120OsAffx.20557.1.S1_at5/1110+8263829..8264128hypothetical protein
LOC_Os10g17130OsAffx.8310.1.S1_x_at11/1110+8271430..8271816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17140OsAffx.286.1.S1_at11/1110+8273561..8274523retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17150NANA10+8279707..8280960retrotransposon protein, putative, unclassified
LOC_Os10g17170NANA10+8290453..8295944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17180NANA10+8298083..8299770retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.286.1.S1_at--24--6271Chr10:8273956..8273980 (25 bp)
GATGTGCAGCTACGACAGGGTCTAT
LOC_Os10g17140
OsAffx.286.1.S1_at--1094--611Chr10:8273979..8274003 (25 bp)
ATGCTGAGCTTCACAAGGCGTCCAA
LOC_Os10g17140
OsAffx.286.1.S1_at--557--2951Chr10:8274002..8274026 (25 bp)
AAGGCCCTCAACAATCAGAAGCTAG
LOC_Os10g17140
OsAffx.286.1.S1_at--120--1171Chr10:8274025..8274049 (25 bp)
AGTCAGGATTGCCAGCCTGCAGGAT
LOC_Os10g17140
OsAffx.286.1.S1_at--766--1031Chr10:8274051..8274075 (25 bp)
AGGTCGCTCGCCTCAAGAGGGAGAA
LOC_Os10g17140
OsAffx.286.1.S1_at--331--5271Chr10:8274073..8274097 (25 bp)
GAATGCTAGGCTGCAGGGACGTCCA
LOC_Os10g17140
OsAffx.286.1.S1_at--204--7271Chr10:8274093..8274117 (25 bp)
GTCCAGCAGTGGTAGGAGCCCGCAT
LOC_Os10g17140
OsAffx.286.1.S1_at--707--4071Chr10:8274129..8274153 (25 bp)
CGAGCAAGTCTACTACAGCACCTGT
LOC_Os10g17140
OsAffx.286.1.S1_at--92--1511Chr10:8274145..8274169 (25 bp)
AGCACCTGTGCGCATCCAGTTGGTG
LOC_Os10g17140
OsAffx.286.1.S1_at--126--6352Chr10:8274302..8274326 (25 bp)
GATGCTCCAGCTTCAGCCTACAGGG
LOC_Os10g17140
OsAffx.286.1.S1_at--807--1391Chr10:8274423..8274447 (25 bp)
AGACGTACGTGCAGGACTCCAGGAG
LOC_Os10g17140
Target Sequence 
GATGTGCAGCTACGACAGGGTCTATGCTGAGCTTCACAAGGCGTCCAAGGCCCTCAACAATCAGAAGCTAGTCAGGATTG
CCAGCCTGCAGGATGAGGTCGCTCGCCTCAAGAGGGAGAATGCTAGGCTGCAGGGACGTCCAGCAGTGGTAGGAGCCCGC
ATCCGCACCATGCCGAGCAAGTCTACTACAGCACCTGTGCGCATCCAGTTGGTGCCCAGGAACCCACCATCCGGGAACCC
GCCTCCTCCACCTTCAGCACCTCCTATAGCGCCCGCAGCTCCCACTCCAGCCCCAGCTCCAGCACCAGCATCATCTTCAG
CTCCCGCGCCTGAGTTCGTCTTCACCGATGCTCCAGCTTCAGCCTACAGGGGCCCAGCCAGTGGCAGTGGAGGTTGGTTG
CCTGCTACTCCCAGTGGCAGCCGCGACCACAGCAGCAGTTCCAGTAGCTCAGAGCCGGGCAGTGGCGAGACGTACGTGCA
GGACTCCAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis