Browse Element(s) Details


OsAffx.20657.1.S1_at

Description tigr:9638.m00956
TID=OsAffx.20657.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g108495/11hypothetical protein
LOC_Os10g107945/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10810NANA10+5745394..5751504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10820NANA10+5751821..5754779retrotransposon protein, putative, unclassified
LOC_Os10g10830NANA10+5757049..5763144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10840OsAffx.21897.5.S1_x_at6/1110+5763460..5766401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10849OsAffx.20657.1.S1_at5/1110+5770148..5770375hypothetical protein
LOC_Os10g10860OsAffx.18211.1.S1_x_at11/1110+5777639..5779653hypothetical protein
LOC_Os10g10870Os.26791.1.S1_a_at11/1110+5784178..5785245protein kinase family protein, putative, expressed
LOC_Os10g10880OsAffx.30385.1.S1_at11/1110+5790565..5794073hypothetical protein
LOC_Os10g10890OsAffx.8405.1.S1_at10/1110+5795045..5796811retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20657.1.S1_at--308--5932Chr10:5770178..5770202 (25 bp)
GAGCTTGTCGTTGATGGCAGCCACG
LOC_Os10g10849
OsAffx.20657.1.S1_at--386--8512Chr10:5770192..5770216 (25 bp)
TGGCAGCCACGAAGATACACGTATG
LOC_Os10g10849
OsAffx.20657.1.S1_at--1097--992Chr10:5770237..5770261 (25 bp)
AGGATACTTCCGTCTTGTGGGCGAG
LOC_Os10g10849
OsAffx.20657.1.S1_at--888--7473Chr10:5770253..5770277 (25 bp)
GTGGGCGAGATCACATCACCGGCGT
LOC_Os10g10849
OsAffx.20657.1.S1_at--125--152Chr10:5770286..5770310 (25 bp)
ATTATGGAGACACTCCGGTCGTGCG
LOC_Os10g10849
OsAffx.20657.1.S1_at--67--1652Chr10:5770358..5770535 (25 bp)
ACAACGGTACTTGTCGACGGCGTGT
NONE
OsAffx.20657.1.S1_at--616--1112Chr10:5770558..5770582 (25 bp)
AGTGTTCTCCTCAAGAGGCTTGACA
NONE
OsAffx.20657.1.S1_at--62--4612Chr10:5770711..5770735 (25 bp)
GCGACTGATGCCTCTGATGGGATGC
NONE
OsAffx.20657.1.S1_at--75--812Chr10:5770727..5770751 (25 bp)
ATGGGATGCTGCAGCCGTGGTCACC
NONE
OsAffx.20657.1.S1_at--611--3992Chr10:5770742..5770766 (25 bp)
CGTGGTCACCGGACGACATGATCGA
NONE
OsAffx.20657.1.S1_at--691--1312Chr10:5770777..5770801 (25 bp)
AGATGTGGCATTTGCTTCCGAGCAC
NONE
Target Sequence 
GAGCTTGTCGTTGATGGCAGCCACGAAGATACACGTATGCCAATGAGTGATGACGAACGAGGATACTTCCGTCTTGTGGG
CGAGATCACATCACCGGCGTCGATGACAATTATGGAGACACTCCGGTCGTGCGGGTCTGAGAGTATGACCGGCGATGGCG
ACGAGTCGGAAGTTGTCCCGACAACGGTACTTGTCGACGGCGTGTGGGCACCTAGCGATGGCGCTCCAGTGTTCTCCTCA
AGAGGCTTGACAATGAATGAGAGGAAGGTGAAATTGCCGGCGAGGATGGTGTCACCGGCGACTGATGCCTCTGATGGGAT
GCTGCAGCCGTGGTCACCGGACGACATGATCGAGGATGATCAAAGATGTGGCATTTGCTTCCGAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis