Browse Element(s) Details


OsAffx.8405.1.S1_at

Description gb:NM_195238.1
DB_XREF= gi:37531835
TID=OsAffx.8405.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0009C07.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1089010/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10849OsAffx.20657.1.S1_at5/1110+5770148..5770375hypothetical protein
LOC_Os10g10860OsAffx.18211.1.S1_x_at11/1110+5777639..5779653hypothetical protein
LOC_Os10g10870Os.26791.1.S1_a_at11/1110+5784178..5785245protein kinase family protein, putative, expressed
LOC_Os10g10880OsAffx.30385.1.S1_at11/1110+5790565..5794073hypothetical protein
LOC_Os10g10890OsAffx.8405.1.S1_at10/1110+5795045..5796811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10904NANA10+5804858..5805160retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.2.S1_x_at10/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.1.S1_x_at9/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.3.S1_x_at6/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10920OsAffx.22947.5.S1_x_at1/1110+5807672..5812244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10929NANA10+5813234..5813536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10938NANA10+5816540..5816764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40855.4.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10950Os.40360.1.S1_x_at1/1110+5820560..5825010retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8405.1.S1_at--563--5491Chr10:5795521..5795545 (25 bp)
GAACAGCCGCCAGAACAGTAGGGAC
LOC_Os10g10890
OsAffx.8405.1.S1_at--1079--1651Chr10:5795517..5795541 (25 bp)
AGCCGCCAGAACAGTAGGGACGCCT
LOC_Os10g10890
OsAffx.8405.1.S1_at--33--1431Chr10:5795510..5795534 (25 bp)
AGAACAGTAGGGACGCCTCGTCCTA
LOC_Os10g10890
OsAffx.8405.1.S1_at--1159--7251Chr10:5795491..5795515 (25 bp)
GTCCTACTCACCAGTCACCGGAAAG
LOC_Os10g10890
OsAffx.8405.1.S1_at--374--9911Chr10:5795487..5795511 (25 bp)
TACTCACCAGTCACCGGAAAGTCCT
LOC_Os10g10890
OsAffx.8405.1.S1_at--1007--5551Chr10:5795459..5795482 (24 bp)
GAAAGCCCCACATTCGCTTCACGGA
LOC_Os10g10890
OsAffx.8405.1.S1_at--253--4371Chr10:5795203..5795475 (25 bp)
CCACATTCGCTTCACGGATGGATAT
LOC_Os10g10890
OsAffx.8405.1.S1_at--1046--91NONE
ATTCGCTTCACGGATGGATATTAAC
NONE
OsAffx.8405.1.S1_at--179--6251Chr10:5795187..5795211 (25 bp)
GATGGATATTAACGCCGCTTGTGTC
LOC_Os10g10890
OsAffx.8405.1.S1_at--321--10811Chr10:5795169..5795193 (25 bp)
TTGTGTCTTCCGTGACGTCGGCGAT
LOC_Os10g10890
OsAffx.8405.1.S1_at--863--6791Chr10:5795092..5795116 (25 bp)
GTTATCAGTAATGAGCTTGCTGCTC
LOC_Os10g10890
Target Sequence 
GAACAGCCGCCAGAACAGTAGGGACGCCTCGTCCTACTCACCAGTCACCGGAAAGTCCTCCGCGAAAGCCCCACATTCGC
TTCACGGATGGATATTAACGCCGCTTGTGTCTTCCGTGACGTCGGCGATGGAGGAGTGCTGCAGCCGATGCAGCGAGCTG
ATGGAGGCATGTCGGGAAGCAGTTATCAGTAATGAGCTTGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis