Browse Element(s) Details


OsAffx.20666.1.S1_at

Description tigr:9638.m00900
TID=OsAffx.20666.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative transcription elongation factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1026011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10214OsAffx.21171.4.S1_x_at2/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10214OsAffx.21171.3.S1_x_at1/1110+5384615..5388949transposon protein, putative, unclassified
LOC_Os10g10230OsAffx.18202.1.S1_at6/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230OsAffx.8356.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10230Os.54774.1.S1_x_at1/1110+5392988..5395183retrotransposon, putative, centromere-specific
LOC_Os10g10244Os.11722.1.S1_a_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_at11/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244Os.11722.3.S1_x_at10/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10244OsAffx.20054.1.S1_at1/1110+5398540..5409129Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
LOC_Os10g10260OsAffx.20666.1.S1_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20666.1.S1_x_at11/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.1.S1_x_at2/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.30370.1.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.20536.2.S1_x_at1/1110+5410892..5411779expressed protein
LOC_Os10g10260OsAffx.15091.1.S1_at1/1110+5410892..5411779expressed protein
LOC_Os10g10270OsAffx.30370.1.S1_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.30370.1.S1_x_at11/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20666.1.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10270OsAffx.20536.2.S1_x_at2/1110+5412162..5412947hypothetical protein
LOC_Os10g10280Os.46319.1.S1_s_at11/1110+5413861..5417242hypothetical protein
LOC_Os10g10280OsAffx.30371.1.S1_at6/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.26733.2.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.52575.1.S1_x_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10280Os.17829.1.S1_at1/1110+5413861..5417242hypothetical protein
LOC_Os10g10290NANA10+5420716..5422699hypothetical protein
LOC_Os10g10300NANA10+5423273..5428084retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10310NANA10+5430254..5430610hypothetical protein
LOC_Os10g10320OsAffx.30374.2.S1_at11/1110+5436317..5437198hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20666.1.S1_at--503--6171Chr10:5411440..5411464 (25 bp)
GAGGATGCCGTGGTCGACTTGCTAC
LOC_Os10g10260
OsAffx.20666.1.S1_at--229--591Chr10:5411436..5411460 (25 bp)
ATGCCGTGGTCGACTTGCTACGCGA
LOC_Os10g10260
OsAffx.20666.1.S1_at--152--7231Chr10:5411428..5411452 (25 bp)
GTCGACTTGCTACGCGACCTGCAGG
LOC_Os10g10260
OsAffx.20666.1.S1_at--790--10711Chr10:5411422..5411446 (25 bp)
TTGCTACGCGACCTGCAGGCCGTGC
LOC_Os10g10260
OsAffx.20666.1.S1_at--1085--4691Chr10:5411173..5411197 (25 bp)
GCGGCGGCTGGCCACGTCAAGACGC
LOC_Os10g10260
OsAffx.20666.1.S1_at--1100--5391Chr10:5411054..5411078 (25 bp)
GAAGCTGAGGGAGCGTTACACAGAG
LOC_Os10g10260
OsAffx.20666.1.S1_at--467--8891Chr10:5411049..5411073 (25 bp)
TGAGGGAGCGTTACACAGAGGAAGA
LOC_Os10g10260
OsAffx.20666.1.S1_at--947--3411Chr10:5411011..5411035 (25 bp)
CAGAGGAAGATACAGATCATCAACA
LOC_Os10g10260
OsAffx.20666.1.S1_at--858--331Chr10:5411002..5411026 (25 bp)
ATACAGATCATCAACAACGCGCCGG
LOC_Os10g10260
OsAffx.20666.1.S1_at--572--9871Chr10:5411001..5411025 (25 bp)
TACAGATCATCAACAACGCGCCGGG
LOC_Os10g10260
OsAffx.20666.1.S1_at--353--4671Chr10:5410935..5410959 (25 bp)
GCGTGGTCCGGGACACGGTGGTCGC
LOC_Os10g10260
Target Sequence 
GAGGATGCCGTGGTCGACTTGCTACGCGACCTGCAGGCCGTGCCGATGACGTTCGAGACGCTGGAGGCGAGCAAGATCAG
CAAGACCATCAGCGGCCTGAGGAAGCACTCGTCGTCGGAGAAGGTGCGCCGCCTCGCCGCCGCGCTCTACAAGAGCTGGA
AGGCTATCGTCGACGAGCACTTGAGCAGGAGCAGCAGCAAGCCGCCGACGCCGACAAAGACCGCCTCCGCACCCGCCGCG
GCTGATCACGCCAAGAAGGCAAACACGGCGGCGGCTGGCCACGTCAAGACGCCAGCGGCGGCGCCGAAGACGGCGGCGTG
CAGCAAGCGCAAGGAGGCGCCCGCGCCGCCGGAGATGGACGAGGCGAAGCTGGAGGCGGCGAGGAAGAAGCTGAGGGAGC
GTTACACAGAGGAAGAGACGGCGAAGAGGCAGAGGAAGATACAGATCATCAACAACGCGCCGGGGAAGGCGAAGCAGCGC
CCCGCCGTCGTCGAGCAGCGGCGGCGCGTGGTCCGGGACACGGTGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis