Browse Element(s) Details


OsAffx.15091.1.S1_at

Description tigr:9633.m04085
TID=OsAffx.15091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g438609/11expressed protein
LOC_Os10g102601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15091.1.S1_at--379--9311Chr05:25420305..25420329 (25 bp)
TCCCGAGCTCCGGCCAAGCTCGTGG
LOC_Os05g43860
OsAffx.15091.1.S1_at--530--4191Chr05:25420304..25420328 (25 bp)
CCCGAGCTCCGGCCAAGCTCGTGGC
LOC_Os05g43860
OsAffx.15091.1.S1_at--702--4231Chr05:25420303..25420327 (25 bp)
CCGAGCTCCGGCCAAGCTCGTGGCC
LOC_Os05g43860
OsAffx.15091.1.S1_at--1155--4072Chr10:5411521..5411577 (25 bp)
CGAGCTCCGGCCAAGCTCGTGGCCG
LOC_Os10g10260
OsAffx.15091.1.S1_at--555--3631Chr05:25419988..25420012 (25 bp)
CTTGCAGCTCCATTCGTGTTGTATT
LOC_Os05g43860
OsAffx.15091.1.S1_at--24--10751Chr05:25419987..25420011 (25 bp)
TTGCAGCTCCATTCGTGTTGTATTT
LOC_Os05g43860
OsAffx.15091.1.S1_at--734--9031Chr05:25419986..25420010 (25 bp)
TGCAGCTCCATTCGTGTTGTATTTG
LOC_Os05g43860
OsAffx.15091.1.S1_at--339--5071Chr05:25419985..25420009 (25 bp)
GCAGCTCCATTCGTGTTGTATTTGT
LOC_Os05g43860
OsAffx.15091.1.S1_at--1073--3371Chr05:25419984..25420008 (25 bp)
CAGCTCCATTCGTGTTGTATTTGTA
LOC_Os05g43860
Target Sequence 
TCCCGAGCTCCGGCCAAGCTCGTGGCCGACGGCCATGCCAGGCCACGGCAAATGCGAATACATGATCTACAGAAATCATA
GCATTGTTTAGGTTCACAGGAAATTAATTGAAGCTTGGTCCATTGGATTCTGAGACATGACCACTGAGACGACTGGGCCA
ATGGTTGCTCATACACGCTACTACTACTAATCTACAATTAAAGTGTTGCAAGTGTGCTGTTCTTGCAGCTCCATTCGTGT
TGTATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis