Browse Element(s) Details


OsAffx.15093.1.S1_x_at

Description tigr:9633.m04087
TID=OsAffx.15093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4388011/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein
LOC_Os05g43900NANA5+25455034..25455941hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15093.1.S1_x_at--528--4611Chr05:25432365..25432389 (25 bp)
GCGAGCGACCAGATCCTCCGGCTGA
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--1071--5871Chr05:25432363..25432387 (25 bp)
GAGCGACCAGATCCTCCGGCTGAAC
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--1097--4071Chr05:25432360..25432384 (25 bp)
CGACCAGATCCTCCGGCTGAACCAC
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--1107--5431Chr05:25432309..25432333 (25 bp)
GAACCTGATGCCCAACTGCAGCCCG
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--1013--2611Chr05:25432308..25432332 (25 bp)
AACCTGATGCCCAACTGCAGCCCGA
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--405--2531Chr05:25432296..25432320 (25 bp)
AACTGCAGCCCGACCGGGTTCGGCG
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--598--1971Chr05:25432295..25432319 (25 bp)
ACTGCAGCCCGACCGGGTTCGGCGA
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--810--5711Chr05:25432125..25432149 (25 bp)
GACTCGCTGCAGGTGATGACGAACG
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--109--3231Chr05:25432057..25432081 (25 bp)
CAAGTCGAGGGTGTCAATGATCTAC
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--784--9731Chr05:25432044..25432068 (25 bp)
TCAATGATCTACTTCGGAGGGCCGC
LOC_Os05g43880
OsAffx.15093.1.S1_x_at--150--451Chr05:25432038..25432062 (25 bp)
ATCTACTTCGGAGGGCCGCCATTGG
LOC_Os05g43880
Target Sequence 
GCGAGCGACCAGATCCTCCGGCTGAACCACTACCCGCCATGCCCGCCGCTGCTGCAGAACCTGATGCCCAACTGCAGCCC
GACCGGGTTCGGCGAGCACACCGACCCGCAGCTCATCTCCATCCTCCACTCCAACTCCACCTCCGGCCTCCAGGTCGCCC
TCCACCACGACGCCGACGCCGGCGACCACCAGTGGGTCACCGTCCCTCCCGACCCCGCCTCCTTCCTCGTCATCGTCGGC
GACTCGCTGCAGGTGATGACGAACGGGAGGATGAGGAGCGTCCGGCACAGGGTGGTGGCCAACAAGCTCAAGTCGAGGGT
GTCAATGATCTACTTCGGAGGGCCGCCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15093.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis