Browse Element(s) Details


OsAffx.15092.1.S1_at

Description tigr:9633.m04086
TID=OsAffx.15092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4387011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15092.1.S1_at--978--4351Chr05:25426758..25426782 (25 bp)
CCACGAAGGCGAGGGACACCGAGCA
LOC_Os05g43870
OsAffx.15092.1.S1_at--426--4331Chr05:25427082..25427106 (25 bp)
CCATGCGGATGCTCAGCGAGCTGTG
LOC_Os05g43870
OsAffx.15092.1.S1_at--676--5291Chr05:25427113..25427137 (25 bp)
GAAGGCGCAGAAGTGATCTTCGAGA
LOC_Os05g43870
OsAffx.15092.1.S1_at--180--7391Chr05:25427125..25427149 (25 bp)
GTGATCTTCGAGAGATATGGTTGGC
LOC_Os05g43870
OsAffx.15092.1.S1_at--578--7411Chr05:25427161..25427185 (25 bp)
GTGTTCGCGCGATTGGGAATTCAGA
LOC_Os05g43870
OsAffx.15092.1.S1_at--443--8211Chr05:25427176..25427200 (25 bp)
GGAATTCAGAAATTTCACCGGCTTT
LOC_Os05g43870
OsAffx.15092.1.S1_at--543--9651Chr05:25427181..25427205 (25 bp)
TCAGAAATTTCACCGGCTTTATATA
LOC_Os05g43870
OsAffx.15092.1.S1_at--1134--4251Chr05:25427193..25427217 (25 bp)
CCGGCTTTATATATGCATCAGTTTA
LOC_Os05g43870
OsAffx.15092.1.S1_at--169--3131Chr05:25427217..25427241 (25 bp)
AATTTACTTGTTTATCTTGCTTAAT
LOC_Os05g43870
OsAffx.15092.1.S1_at--492--8751Chr05:25427234..25427258 (25 bp)
TGCTTAATTTAAGACGTGTTTGGTA
LOC_Os05g43870
OsAffx.15092.1.S1_at--832--6811Chr05:25427283..25427307 (25 bp)
GTTTTTGAATTACTGGGTGCCTAGA
LOC_Os05g43870
Target Sequence 
CCACGAAGGCGAGGGACACCGAGCACGCGCTGAGGGAGAGCGCGGCGCGGGAGGCGGCCCGTGTCGCCGAGCGCCTGCGG
GCGTCGGAGCGCGCGCGGGAGGCGCTGGAGGCGGAGTTGCAGCGCGGCCGCGCGCAGAGCGAGCAGTGGCGCAAGGCGGC
CGAGGAGGCCGCCGCGGTGCTCGCCGCGGTGGAGCACGGCGCCGGCGCGCCCGCCGCCGACGTAGAGTGGCGGCGCCACA
GCTCGGGCGCCGCCGCTGGCGAGAGGGTGGCCAAGGACACGGACGAACACCACGTCTCCGGCGGGAAGCGGAACAGCGGC
GGCGCCATGCGGATGCTCAGCGAGCTGTGGAAGAAGAAGGCGCAGAAGTGATCTTCGAGAGATATGGTTGGCGGGAAGCG
ATGGTGTTCGCGCGATTGGGAATTCAGAAATTTCACCGGCTTTATATATGCATCAGTTTAATTTACTTGTTTATCTTGCT
TAATTTAAGACGTGTTTGGTAAAAAAAATAACATTATTTTGTGTTGTTTTTGAATTACTGGGTGCCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis