Browse Element(s) Details


Os.15784.1.A1_s_at

Description gb:AU033045
DB_XREF= gi:3769018
DB_XREF=AU033045
CLONE=S1673_1Z
TID=Os.15784.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15784 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4386011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43820Os.37828.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.10032.1.S1_at11/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43820Os.45896.1.S1_x_at5/115+25391593..25394975RAC-like GTP binding protein ARAC7, putative, expressed
LOC_Os05g43830Os.5650.1.S1_at9/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10728.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43830Os.10719.1.S1_at1/115+25393874..25401165Proline iminopeptidase, putative, expressed
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15784.1.A1_s_at--356--7711Chr05:25420505..25420529 (25 bp)
GGTGGCCGCTGCTATTGGAGGACAA
LOC_Os05g43860
Os.15784.1.A1_s_at--539--4611Chr05:25420473..25420497 (25 bp)
GCGAGCCGTGACATGGTGCCTCCGC
LOC_Os05g43860
Os.15784.1.A1_s_at--765--5131Chr05:25420258..25420282 (25 bp)
GCAAATGCGAATACATGATCTACAG
LOC_Os05g43860
Os.15784.1.A1_s_at--8--6431Chr05:25420146..25420266 (25 bp)
GATCTACAGAAATCATAGCATTGTT
LOC_Os05g43860
Os.15784.1.A1_s_at--487--7931Chr05:25420085..25420109 (25 bp)
GGATTCTGAGACATGACCACTGAGA
LOC_Os05g43860
Os.15784.1.A1_s_at--929--8911Chr05:25420072..25420096 (25 bp)
TGACCACTGAGACGACTGGGCCAAT
LOC_Os05g43860
Os.15784.1.A1_s_at--862--8651Chr05:25420056..25420080 (25 bp)
TGGGCCAATGGTTGCTCATACACGC
LOC_Os05g43860
Os.15784.1.A1_s_at--704--3751Chr05:25420042..25420066 (25 bp)
CTCATACACGCTACTACTACTAATC
LOC_Os05g43860
Os.15784.1.A1_s_at--1026--7611Chr05:25419945..25419969 (25 bp)
GGGAAATGCCTGTGATTGTGAATTA
LOC_Os05g43860
Os.15784.1.A1_s_at--283--5131Chr05:25419911..25419935 (25 bp)
GCACAATGTCGAATTACTGCAGTTC
LOC_Os05g43860
Os.15784.1.A1_s_at--989--5211Chr05:25419901..25419925 (25 bp)
GAATTACTGCAGTTCGCCTACCTGA
LOC_Os05g43860
Target Sequence 
GGTGGCCGCTGCTATTGGAGGACAAGGCCGCGGCGAGCCGTGACATGGTGCCTCCGCTCCCGCCGCTGCCGTCGATGAAG
TCGCCGTCGGAGTCCTGGCTCTCGCGGGCGCTGCCGTCCGTGTCGAGCAACCCTCCGGCGACCTCCTTCCTCGGCATCCA
CGTGCAGCACAAGAAGCAGTCTCCACCTCCAAGGTGTTCGTCCCGAGCTCCGGCNAAGCTCNNGGCCGANGGCCATGCCA
GGCCNCNGCAAATGCGAATACATGATCTACAGAAATCATAGCATTGTTTAGGTNCNCAGGAAATTAATTGAANCTTGGNC
CATTGGATTCTGAGACATGACCACTGAGACGACTGGGCCAATGGTTGCTCATACACGCTACTACTACTAATCTACAATTA
AAGTGTTGCAAGTGTGCTGTTCTTGCAGCNCCANNCGTGTTGTATTTGTATATACTAGTTCAAGGGGAAATGCCTGTGAT
TGTGAATTAANCATGCATGCACAATGTCGAATTACTGCAGTTCGCCTACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15784.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis