Browse Element(s) Details


OsAffx.20677.1.S1_at

Description tigr:9638.m00862
TID=OsAffx.20677.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0989011/11hypothetical protein
LOC_Os09g266808/11hAT family dimerisation domain containing protein
LOC_Os12g163406/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09860OsAffx.6627.1.S1_at11/1110+5100872..5102305Chalcone synthase 8, putative
LOC_Os10g09870Os.50561.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.51981.1.S1_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09870Os.4824.1.A1_s_at11/1110+5107090..5113008TB2/DP1, HVA22 family protein, expressed
LOC_Os10g09880Os.40855.2.S1_x_at3/1110+5117300..5119003hypothetical protein
LOC_Os10g09890OsAffx.20677.1.S1_at11/1110+5126814..5127359hypothetical protein
LOC_Os10g09900OsAffx.20676.1.S1_at11/1110+5128002..5131279transposon protein, putative, Mutator sub-class
LOC_Os10g09910OsAffx.30364.1.S1_x_at11/1110+5131494..5132315hypothetical protein
LOC_Os10g09920OsAffx.30365.1.S1_at11/1110+5135311..5135697Protease inhibitor/seed storage/LTP family protein
LOC_Os10g09930Os.8253.1.S1_at10/1110+5145817..5146916expressed protein
LOC_Os10g09940NANA10+5151577..5155321retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20677.1.S1_at--1156--8113Chr12:9342590..9342612 (23 bp)
GGACATGTCCCAAGGTAGTTCCTTT
LOC_Os12g16340
OsAffx.20677.1.S1_at--1108--7232Chr12:9342650..9342674 (25 bp)
GTCCCAGTGGACTTCCTCTTGTGAA
LOC_Os12g16340
OsAffx.20677.1.S1_at--153--5692Chr12:9342659..9342683 (25 bp)
GACTTCCTCTTGTGAAGTGCCCAAG
LOC_Os12g16340
OsAffx.20677.1.S1_at--742--1093Chr12:9342699..9342723 (25 bp)
AGTGGAGTGCAAATCCTGGAGGCAA
LOC_Os12g16340
OsAffx.20677.1.S1_at--634--8191Chr10:5126980..5127004 (25 bp)
GGCAAGGTGGTCGAGTGTTTTTCAA
LOC_Os10g09890
OsAffx.20677.1.S1_at--485--3112Chr10:5127022..5127136 (25 bp)
AATATGTTCCAGATGCTTGCACGTT
LOC_Os10g09890
OsAffx.20677.1.S1_at--576--6332Chr10:5127123..5127147 (25 bp)
GATGCTTGCACGTTTTTCAAGTGGT
LOC_Os10g09890
OsAffx.20677.1.S1_at--225--3012Chr10:5127192..5127216 (25 bp)
AATGAAGAAGTTGCAACCCCAGTTG
LOC_Os10g09890
OsAffx.20677.1.S1_at--814--2612Chr10:5127206..5127230 (25 bp)
AACCCCAGTTGCAATAGCAGCAGCA
LOC_Os10g09890
OsAffx.20677.1.S1_at--83--7993Chr12:9343020..9343044 (25 bp)
GGATGCAACTTCTTGTGTTGATCAA
LOC_Os12g16340
OsAffx.20677.1.S1_at--806--3553Chr12:9343045..9343068 (24 bp)
CATAGGGCAAGGCATATTAGTTCTG
LOC_Os12g16340
Target Sequence 
GGACATGTCCCAAGGTAGTTCCTTTCGTGCTCCCGGGCGCCAACTCTCTCGTTTTCTTCTTGGTCCCAGTGGACTTCCTC
TTGTGAAGTGCCCAAGATGTGGGAATGCAGTAGTGGAGTGCAAATCCTGGAGGCAAGGTGGTCGAGTGTTTTTCAAATGC
GAGAAGAATGAACAATATGTTCCAGATGCTTGCACGTTTTTCAAGTGGTATGATAGTTACCAAAGAATGGTGGAAGGAAT
GGAATTAGATTTCAATGAAGAAGTTGCAACCCCAGTTGCAATAGCAGCAGCAGGTGAGGCTGACAAGGTTGATGAAGGGA
AGATGGATAAACTAACTAAGTGGATGCAACTTCTTGTGTTGATCAACATAGGGCAAGGCATATTAGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis