Browse Element(s) Details


OsAffx.20725.4.S1_at

Description tigr:9639.m01767
TID=OsAffx.20725.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18990Os.50434.1.S1_at1/1111+10803308..10804956histidine triad family protein, putative
LOC_Os11g19000NANA11+10814264..10814881transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19010NANA11+10816380..10817165transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19020NANA11+10817680..10818980hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_at11/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.4.S1_x_at10/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.3.S1_x_at3/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_at2/1111+10823173..10833313hypothetical protein
LOC_Os11g19030OsAffx.20725.1.S1_x_at1/1111+10823173..10833313hypothetical protein
LOC_Os11g19040OsAffx.18934.1.S1_x_at4/1111+10834093..10834353hypothetical protein
LOC_Os11g19050OsAffx.18935.1.S1_at11/1111+10837604..10838558hypothetical protein
LOC_Os11g19060OsAffx.18936.1.S1_at11/1111+10841051..10845913AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os11g19070OsAffx.18937.1.S1_at11/1111+10849054..10849819hypothetical protein
LOC_Os11g19080NANA11+10851577..10854656hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20725.4.S1_at--789--2291Chr11:10832370..10832518 (25 bp)
AAATGGGAGCATATAGGCATGTTCT
LOC_Os11g19030
OsAffx.20725.4.S1_at--625--931Chr11:10832905..10832929 (25 bp)
AGGAAGGACCCGTGACCCGGATGAG
LOC_Os11g19030
OsAffx.20725.4.S1_at--148--8231Chr11:10832951..10832975 (25 bp)
GGCAAAAAGATGTGCACACGGGAAT
LOC_Os11g19030
OsAffx.20725.4.S1_at--1035--9192Chr11:10832984..10833008 (25 bp)
TGCCATCTGAGGGATGGGCATTATG
LOC_Os11g19030
OsAffx.20725.4.S1_at--298--5231Chr11:10833010..10833034 (25 bp)
GAATACATGTCCGATGAACCCAACA
LOC_Os11g19030
OsAffx.20725.4.S1_at--10--9871Chr11:10833013..10833037 (25 bp)
TACATGTCCGATGAACCCAACAAAT
LOC_Os11g19030
OsAffx.20725.4.S1_at--179--8972Chr11:10833024..10833048 (25 bp)
TGAACCCAACAAATTTCAACAAGGT
LOC_Os11g19030
OsAffx.20725.4.S1_at--930--4491Chr11:10833114..10833138 (25 bp)
GCCGTGGTACCAATGCTGGATGCAA
LOC_Os11g19030
OsAffx.20725.4.S1_at--841--5351Chr11:10833224..10833248 (25 bp)
GAAGATGCGGCTGAATCTGCTAGGT
LOC_Os11g19030
OsAffx.20725.4.S1_at--1154--9111Chr11:10833229..10833253 (25 bp)
TGCGGCTGAATCTGCTAGGTATACA
LOC_Os11g19030
OsAffx.20725.4.S1_at--1080--9072Chr11:10833241..10833265 (25 bp)
TGCTAGGTATACAGATGACGATCAA
LOC_Os11g19030
Target Sequence 
AAATGGGAGCATATAGGCATGTTCTGCACACACATGCCCTGGGCATTTGTTCATGTACAACTTGAGAAGATACCCGCTGC
CTACATCCTAAAGAGGTCAAGAACAAAAGGAAGGACCCGTGACCCGGATGAGGAAGTTCAAATTGGAGCCAAGGGCAAAA
AGATGTGCACACGGGAATGTGGGTGGTGCCATCTGAGGGATGGGCATTATGCGAATACATGTCCGATGAACCCAACAAAT
TTCAACAAGGTCATGAAGGCCGCTAATAGGGGTAAGGGAAAGAGGGGCAGGCCACGAGGATCCGGCAGGGGTAGAGGCCG
TGGTACCAATGCTGGATGCAAAGTTAGTACTGCAGTCCCTAGAACAACAAGGAGATCAACCAGGGAGGGTCCATCGCTGC
GAAGATGTTTGGACAACGAGTGGGCTGAAGATGCGGCTGAATCTGCTAGGTATACAGATGACGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20725.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis