Browse Element(s) Details


OsAffx.20758.1.S1_at

Description tigr:9638.m00387
TID=OsAffx.20758.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0477011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04740Os.46012.2.S1_x_at8/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.27088.1.A1_x_at6/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04740Os.46012.3.S1_x_at4/1110+2250119..2255384retrotransposon protein, putative, unclassified
LOC_Os10g04750OsAffx.20760.1.S1_at10/1110+2262698..2263592F-box domain containing protein
LOC_Os10g04760OsAffx.20759.1.S1_at9/1110+2265117..2266872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed
LOC_Os10g04790OsAffx.30280.1.S1_x_at11/1110+2291947..2292198hypothetical protein
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20758.1.S1_at--72--10411Chr10:2276485..2276509 (25 bp)
TTTTGTTGATCCTGGCATACTCGTT
LOC_Os10g04770
OsAffx.20758.1.S1_at--129--10231Chr10:2276448..2276472 (25 bp)
TATTGGTTCCCCACTGGTCTTGGCA
LOC_Os10g04770
OsAffx.20758.1.S1_at--560--8571Chr10:2276402..2276426 (25 bp)
TGGATAGGCAAACCCTTGCTGTGAT
LOC_Os10g04770
OsAffx.20758.1.S1_at--959--10711Chr10:2276387..2276411 (25 bp)
TTGCTGTGATTGAGTGGCCTTCCAA
LOC_Os10g04770
OsAffx.20758.1.S1_at--374--311Chr10:2276351..2276375 (25 bp)
ATAGCCACTACATGTCTCAGATCTT
LOC_Os10g04770
OsAffx.20758.1.S1_at--632--1051Chr10:2276317..2276341 (25 bp)
AGGTGGTTATCTTGGCCTTGTCACT
LOC_Os10g04770
OsAffx.20758.1.S1_at--835--8711Chr10:2276291..2276315 (25 bp)
TGTCGTACGACAGCCTTCAAATATG
LOC_Os10g04770
OsAffx.20758.1.S1_at--860--6331Chr10:2276128..2276152 (25 bp)
GATGCTTCTATGTGCTGATTCCAGT
LOC_Os10g04770
OsAffx.20758.1.S1_at--416--6591Chr10:2276112..2276136 (25 bp)
GATTCCAGTGTCTTCATGCTACAAA
LOC_Os10g04770
OsAffx.20758.1.S1_at--1008--6551Chr10:2276085..2276109 (25 bp)
GATTCACTGCAGTCCAGGAAGCTTT
LOC_Os10g04770
OsAffx.20758.1.S1_at--579--1691Chr10:2276055..2276079 (25 bp)
ACCAATATTATGTCCTCGCTTCATC
LOC_Os10g04770
Target Sequence 
TTTTGTTGATCCTGGCATACTCGTTGGCCATTCCCTGTATTGGTTCCCCACTGGTCTTGGCAGTGCCATTCTTCAGTTTG
ATTTGGATAGGCAAACCCTTGCTGTGATTGAGTGGCCTTCCAATCCAAATTGTTATAGCCACTACATGTCTCAGATCTTT
CTGGCAGAAGGTGGTTATCTTGGCCTTGTCACTCTGTCGTACGACAGCCTTCAAATATGGGAGAGGAAGGTCTGTTCTGA
AGGTGTTACCAGATGGGTGCTGCAGAGGACAGCTGAGCTAAACAAGGTTCTTGAACTGGGCTCTGGGGTCAAGACAAGTC
ATTTAGTGAGATTGGGTTATGCTGAGGATGTTAAGGTGATGCTTCTATGTGCTGATTCCAGTGTCTTCATGCTACAAATT
GATTCACTGCAGTCCAGGAAGCTTTGGGAAACCAATATTATGTCCTCGCTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis