Browse Element(s) Details


OsAffx.20777.1.S1_at

Description tigr:9638.m00250
TID=OsAffx.20777.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0343010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03390Os.46736.1.S1_at11/1110+1428150..1429458Transferase family protein, expressed
LOC_Os10g03400OsAffx.12171.1.S1_at11/1110+1431712..1435496CRAL/TRIO, N-terminus family protein, expressed
LOC_Os10g03410OsAffx.30255.1.S1_at10/1110+1436508..1437543hypothetical protein
LOC_Os10g03420NANA10+1440099..1441250Leucine Rich Repeat family protein
LOC_Os10g03430OsAffx.20777.1.S1_at10/1110+1448842..1450087hypothetical protein
LOC_Os10g03430Os.6062.1.S1_at2/1110+1448842..1450087hypothetical protein
LOC_Os10g03440OsAffx.18105.1.S1_at11/1110+1452880..1454262U-box domain containing protein
LOC_Os10g03450NANA10+1463842..1464354hypothetical protein
LOC_Os10g03460Os.47463.1.S1_x_at5/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03460Os.14491.2.S1_x_at4/1110+1466780..1470477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g03470NANA10+1473047..1476379transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20777.1.S1_at--436--8371Chr10:1448957..1448981 (25 bp)
GGCGTCATGGACTCATCGTCGTACG
LOC_Os10g03430
OsAffx.20777.1.S1_at--394--2011Chr10:1448967..1448991 (25 bp)
ACTCATCGTCGTACGTCAGCGTGGG
LOC_Os10g03430
OsAffx.20777.1.S1_at--494--5291Chr10:1448998..1449022 (25 bp)
GAATGGCTGAATGCGAGCGCCGACA
LOC_Os10g03430
OsAffx.20777.1.S1_at--963--3411Chr10:1449085..1449109 (25 bp)
CAGAACGGCGGCTCTGGCTTCGGCT
LOC_Os10g03430
OsAffx.20777.1.S1_at--583--10631Chr10:1449136..1449160 (25 bp)
TTCGACGACGCCACAGGAGACATCT
LOC_Os10g03430
OsAffx.20777.1.S1_at--185--971Chr10:1449150..1449174 (25 bp)
AGGAGACATCTTGTTAGCACCATCT
LOC_Os10g03430
OsAffx.20777.1.S1_at--801--1631Chr10:1449188..1449212 (25 bp)
AGCGGTGGATGATATCAGCACATAT
LOC_Os10g03430
OsAffx.20777.1.S1_at--1108--231Chr10:1449211..1449235 (25 bp)
ATATACTCTGAGATCTGCTGGGCCT
LOC_Os10g03430
OsAffx.20777.1.S1_at--91--9131Chr10:1449226..1449250 (25 bp)
TGCTGGGCCTTGCACTGGCATATTG
LOC_Os10g03430
OsAffx.20777.1.S1_at--860--3571NONE
CATATTGGTTGCAAATTACGGTATA
NONE
OsAffx.20777.1.S1_at--914--132Chr10:1449934..1449958 (25 bp)
ATTACGGTATAACAGCACAGGAGGA
LOC_Os10g03430
Target Sequence 
GGCGTCATGGACTCATCGTCGTACGTCAGCGTGGGGTTGGTGAATGGCTGAATGCGAGCGCCGACATGGGCTTCTCGTGT
TTGGTGGTGTCCGTCCGGCTCATCGGCGGACGAGCACGAGGCTACGGGCAGAACGGCGGCTCTGGCTTCGGCTCCACGCG
GCCGCCGGCGTCGATGGGCTTCGACGACGCCACAGGAGACATCTTGTTAGCACCATCTCCTCTCCACCACCAGCGGTGGA
TGATATCAGCACATATATACTCTGAGATCTGCTGGGCCTTGCACTGGCATATTGGTTGCAAATTACGGTATAACAGCACA
GGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis