Browse Element(s) Details


OsAffx.20783.1.S1_at

Description tigr:9638.m00215
TID=OsAffx.20783.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03060OsAffx.20784.1.S1_at11/1110+1258752..1260367hypothetical protein
LOC_Os10g03070OsAffx.32166.1218.S1_x_at3/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070OsAffx.1349.1.S1_x_at1/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070OsAffx.30280.1.S1_x_at1/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03080OsAffx.20783.1.S1_at11/1110+1276774..1278273hypothetical protein
LOC_Os10g03090NANA10+1285137..1285511expressed protein
LOC_Os10g03100Os.46475.1.S1_at11/1110+1292562..1295093Leucine Rich Repeat family protein, expressed
LOC_Os10g03110OsAffx.8551.1.S1_at11/1110+1295672..1300612retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03120OsAffx.8550.1.S1_at11/1110+1302208..1304668retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20783.1.S1_at--830--271Chr10:1277679..1277701 (23 bp)
ATAGGTTGTACGCATGAAATCTCAT
LOC_Os10g03080
OsAffx.20783.1.S1_at--118--8971Chr10:1277691..1277715 (25 bp)
TGAAATCTCATTGCCTAATTCGGGA
LOC_Os10g03080
OsAffx.20783.1.S1_at--822--5371Chr10:1277764..1277788 (25 bp)
GAAGAATCTCATGTAGGTGTATCAT
LOC_Os10g03080
OsAffx.20783.1.S1_at--445--8571Chr10:1277792..1277816 (25 bp)
TGGATACTCGTAACATGGCAAGAAA
LOC_Os10g03080
OsAffx.20783.1.S1_at--319--9352Chr10:1277839..1277863 (25 bp)
TCGACACTCGTGCAGATGTACAAGG
LOC_Os10g03080
OsAffx.20783.1.S1_at--966--7971Chr10:1277883..1277907 (25 bp)
GGATGCCCACGGATGGACACAAGCA
LOC_Os10g03080
OsAffx.20783.1.S1_at--446--2131Chr10:1277915..1277939 (25 bp)
ACAGCACTGGAGGTTCGACTTGGCA
LOC_Os10g03080
OsAffx.20783.1.S1_at--443--7391Chr10:1277948..1277972 (25 bp)
GTGAGAGCCGATGGCAAGTGCCTCA
LOC_Os10g03080
OsAffx.20783.1.S1_at--444--8231Chr10:1277960..1277984 (25 bp)
GGCAAGTGCCTCATGATGTGCATTG
LOC_Os10g03080
OsAffx.20783.1.S1_at--725--10131Chr10:1278105..1278129 (25 bp)
TATGCAAACGGGACAGATCCAACAC
LOC_Os10g03080
OsAffx.20783.1.S1_at--1078--2491Chr10:1278218..1278242 (25 bp)
AACATAATGTCCTTCAAGCGTACTT
LOC_Os10g03080
Target Sequence 
ATAGGTTGTACGCATGAAATCTCATTGCCTAATTCGGGATGTCATTTGTACAACTGCCATGAGCTAACCATTCCCCTGCA
GACCATAGAAGAATCTCATGTAGGTGTATCATACATGGATACTCGTAACATGGCAAGAAACAAACGTGAAGGTTCAACAT
CCTCGACACTCGTGCAGATGTACAAGGCTGACTGGGAGCCAACTGGGGATGCCCACGGATGGACACAAGCACCACGCCAC
AGCACTGGAGGTTCGACTTGGCAGAATGCCAGTGAGAGCCGATGGCAAGTGCCTCATGATGTGCATTGGGGGAATTTGAA
CGCCCATTCCCCCAGATCAAGTGGTATGCCTCCGTCCCCCGACAGGTGGCGCTCAAGTTCCTCTTATTGGGACTTGGGTG
AAATCACGAGGAGAATGGATACCCTTGATATGCAAACGGGACAGATCCAACACAACCTTGAGGAACACATAGTGCAAACG
CAAGGATGGCAACAGAATGCTGATGCTCAGTTCACCAACATCAACAACCTGATGCAGCAACAACATAATGTCCTTCAAGC
GTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20783.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis