Browse Element(s) Details


OsAffx.1349.1.S1_x_at

Description gb:NM_187833.1
DB_XREF= gi:34902751
GEN=P0710F09.45
TID=OsAffx.1349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromsoome 3, OSJNBa0040E01.23 (P0710F09.45), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2298011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g030701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g298501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22960OsAffx.15476.1.S1_at1/117+12929985..12948389retrotransposon protein, putative, unclassified
LOC_Os07g22970OsAffx.5782.1.S1_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22970OsAffx.8326.1.S1_x_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22980OsAffx.1349.1.S1_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22980OsAffx.1349.1.S1_x_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22990NANA7+12968312..12969128hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.2.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_x_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23020OsAffx.10039.1.S1_at1/117+12982661..12983472retrotransposon protein, putative, unclassified
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1349.1.S1_x_at--627--1811Chr07:12965783..12965807 (25 bp)
ACGCGTAAAGCTCGGCTCGGCGAAC
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--777--7033Chr07:12965787..12965811 (25 bp)
GTAAAGCTCGGCTCGGCGAACTCAC
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--613--4591Chr07:12965802..12965826 (25 bp)
GCGAACTCACCAGCGGTTTGGATGA
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--553--9671Chr07:12965808..12965832 (25 bp)
TCACCAGCGGTTTGGATGACGACGG
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--507--1851Chr07:12965826..12965850 (25 bp)
ACGACGGACGGCGACGATTGATGAC
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--512--7775Chr07:12965874..12965898 (25 bp)
GGTCTTCGGGTCGTCGATGGTGGCA
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--275--8631Chr07:12965891..12965915 (25 bp)
TGGTGGCAGCGCTCCGGTAGTCTTC
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--70--1651Chr07:12965898..12965922 (25 bp)
AGCGCTCCGGTAGTCTTCGGCGGAA
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--1061--4531Chr07:12965901..12965925 (25 bp)
GCTCCGGTAGTCTTCGGCGGAAACG
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--483--951Chr07:12965938..12965962 (25 bp)
AGGACGACGGAGACCTTGCGAACCT
LOC_Os07g22980
OsAffx.1349.1.S1_x_at--730--1736Chr07:12965950..12965974 (25 bp)
ACCTTGCGAACCTGGCGACGGCCTT
LOC_Os07g22980
Target Sequence 
ACGCGTAAAGCTCGGCTCGGCGAACTCACCAGCGGTTTGGATGACGACGGACGGCGACGATTGATGACGGCGGCGAGGTC
GAGGCGGCGGCGGTCTTCGGGTCGTCGATGGTGGCAGCGCTCCGGTAGTCTTCGGCGGAAACGGAGGACGGGACAAGGAC
GACGGAGACCTTGCGAACCTGGCGACGGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1349.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis