Browse Element(s) Details


OsAffx.10040.1.S1_at

Description gb:NM_187837.1
DB_XREF= gi:34902759
GEN=P0710F09.49
TID=OsAffx.10040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0710F09.49), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2301011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22970OsAffx.5782.1.S1_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22970OsAffx.8326.1.S1_x_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22980OsAffx.1349.1.S1_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22980OsAffx.1349.1.S1_x_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22990NANA7+12968312..12969128hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.2.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_x_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23020OsAffx.10039.1.S1_at1/117+12982661..12983472retrotransposon protein, putative, unclassified
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10040.1.S1_at--5--4414Chr10:9315397..9315566 (25 bp)
GCCAGAGGGACAAGGGTGTTTCCAT
NONE
OsAffx.10040.1.S1_at--288--7631Chr07:12979691..12979859 (25 bp)
GGGACAAGGGTGTTTCCATGATCTT
LOC_Os07g23010
OsAffx.10040.1.S1_at--301--5611Chr07:12979841..12979861 (21 bp)
GACAAGGGTGTTTCCATGATCTTCA
LOC_Os07g23010
OsAffx.10040.1.S1_at--997--3211Chr07:12979841..12979863 (23 bp)
CAAGGGTGTTTCCATGATCTTCATA
LOC_Os07g23010
OsAffx.10040.1.S1_at--505--2892Chr07:12979841..12979864 (24 bp)
AAGGGTGTTTCCATGATCTTCATAA
LOC_Os07g23010
OsAffx.10040.1.S1_at--842--7711Chr07:12979842..12979866 (25 bp)
GGGTGTTTCCATGATCTTCATAAAG
LOC_Os07g23010
OsAffx.10040.1.S1_at--707--7431Chr07:12979844..12979868 (25 bp)
GTGTTTCCATGATCTTCATAAAGAT
LOC_Os07g23010
OsAffx.10040.1.S1_at--621--6411Chr07:12979854..12979878 (25 bp)
GATCTTCATAAAGATTATCCCTGAA
LOC_Os07g23010
OsAffx.10040.1.S1_at--195--2331Chr07:12979863..12979887 (25 bp)
AAAGATTATCCCTGAATTAGAATGG
LOC_Os07g23010
OsAffx.10040.1.S1_at--592--531Chr07:12979870..12979894 (25 bp)
ATCCCTGAATTAGAATGGAATTTTC
LOC_Os07g23010
OsAffx.10040.1.S1_at--972--1454Chr10:10211009..10211032 (24 bp)
AGAATGGAATTTTCGGAGGATGAAT
NONE
Target Sequence 
GCCAGAGGGACAAGGGTGTTTCCATGATCTTCATAAAGATTATCCCTGAATTAGAATGGAATTTTCGGAGGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis