Browse Element(s) Details


OsAffx.10040.2.S1_at

Description tigr:9635.m02184
TID=OsAffx.10040.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2301011/11hypothetical protein
LOC_Os03g363701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22970OsAffx.5782.1.S1_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22970OsAffx.8326.1.S1_x_at1/117+12952278..12956731hypothetical protein
LOC_Os07g22980OsAffx.1349.1.S1_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22980OsAffx.1349.1.S1_x_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22990NANA7+12968312..12969128hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.2.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_x_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23020OsAffx.10039.1.S1_at1/117+12982661..12983472retrotransposon protein, putative, unclassified
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10040.2.S1_at--305--5611Chr07:12979693..12979715 (23 bp)
GACAAGGTTAGGCTTGATCGAAGCA
LOC_Os07g23010
OsAffx.10040.2.S1_at--42--10599Chr10:10211069..10211093 (25 bp)
TTCGACAGTTGAGTCGGGTTCCGAC
NONE
OsAffx.10040.2.S1_at--939--7653Chr10:10211084..10211105 (22 bp)
GGGTTCCGACTCCACGTGCAGACGT
NONE
OsAffx.10040.2.S1_at--428--7331Chr07:12979972..12979996 (25 bp)
GTGCAGACGTTCCTCATGGGTAATC
LOC_Os07g23010
OsAffx.10040.2.S1_at--445--8631Chr07:12979988..12980012 (25 bp)
TGGGTAATCTCGACCTCCAGGACGA
LOC_Os07g23010
OsAffx.10040.2.S1_at--167--4351Chr07:12980004..12980028 (25 bp)
CCAGGACGACTTCGCTGCGGCAGAA
LOC_Os07g23010
OsAffx.10040.2.S1_at--1008--9131Chr07:12980019..12980043 (25 bp)
TGCGGCAGAAAGAATCGCTCTCTAA
LOC_Os07g23010
OsAffx.10040.2.S1_at--1110--5251Chr07:12980030..12980054 (25 bp)
GAATCGCTCTCTAAGATGAGATCTA
LOC_Os07g23010
OsAffx.10040.2.S1_at--529--1271Chr07:12980048..12980072 (25 bp)
AGATCTAGGAGTTCTCTTCCTTCGG
LOC_Os07g23010
OsAffx.10040.2.S1_at--674--8351Chr07:12980071..12980095 (25 bp)
GGCGGTTCTCTTGTGTGCGAACGAT
LOC_Os07g23010
OsAffx.10040.2.S1_at--866--4591Chr07:12980087..12980111 (25 bp)
GCGAACGATCCTGCGGCGGAAATAC
LOC_Os07g23010
Target Sequence 
GACAAGGTTAGGCTTGATCGAAGCAACTGGAATGAGGATTCGACAGTTGAGTCGGGTTCCGACTCCACGTGCAGACGTTC
CTCATGGGTAATCTCGACCTCCAGGACGACTTCGCTGCGGCAGAAAGAATCGCTCTCTAAGATGAGATCTAGGAGTTCTC
TTCCTTCGGCGGTTCTCTTGTGTGCGAACGATCCTGCGGCGGAAATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10040.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis