Browse Element(s) Details


OsAffx.20800.1.S1_at

Description tigr:9638.m00117
TID=OsAffx.20800.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0214010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02130OsAffx.20801.1.S1_at11/1110+705811..706274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02140OsAffx.20800.1.S1_at10/1110+708908..709854hypothetical protein
LOC_Os10g02150OsAffx.31069.1.S1_x_at1/1110+717096..720063retrotransposon protein, putative, unclassified
LOC_Os10g02160NANA10+720799..723377retrotransposon protein, putative, unclassified
LOC_Os10g02170NANA10+723804..726822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02180NANA10+733549..735851retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20800.1.S1_at--1028--5751Chr10:709792..709816 (25 bp)
GACGTGCCTCGGGTGTGCAAATCCA
LOC_Os10g02140
OsAffx.20800.1.S1_at--14--7731Chr10:709782..709806 (25 bp)
GGGTGTGCAAATCCACCACCGCAAG
LOC_Os10g02140
OsAffx.20800.1.S1_at--714--2951Chr10:709760..709784 (25 bp)
AAGGCCTCGGGCACACAGGATCTGT
LOC_Os10g02140
OsAffx.20800.1.S1_at--1049--4091Chr10:709717..709741 (25 bp)
CGACTTCGAGCACGGTGCAGATCCA
LOC_Os10g02140
OsAffx.20800.1.S1_at--326--1251Chr10:709699..709723 (25 bp)
AGATCCACCGTTGTTGGACCACTGG
LOC_Os10g02140
OsAffx.20800.1.S1_at--150--5851Chr10:709683..709707 (25 bp)
GACCACTGGGCCCAGGTGACTTCGA
LOC_Os10g02140
OsAffx.20800.1.S1_at--168--7351Chr10:709668..709692 (25 bp)
GTGACTTCGACCACATCAGTGGTGG
LOC_Os10g02140
OsAffx.20800.1.S1_at--252--411Chr10:709654..709678 (25 bp)
ATCAGTGGTGGCCTCGATCGACGAC
LOC_Os10g02140
OsAffx.20800.1.S1_at--1110--5731Chr10:709626..709650 (25 bp)
GACGGCGGATCCCAACATGACGATG
LOC_Os10g02140
OsAffx.20800.1.S1_at--678--3451NONE
CAGTGGATCCGGTGCTCTTTTTCAT
NONE
OsAffx.20800.1.S1_at--841--3971Chr10:708956..708979 (24 bp)
CGGTGCTCTTTTTCATGGTCAATGT
LOC_Os10g02140
Target Sequence 
GACGTGCCTCGGGTGTGCAAATCCACCACCGCAAGGCCTCGGGCACACAGGATCTGTGCGCCGCCGGGCCTCGGGCGACT
TCGAGCACGGTGCAGATCCACCGTTGTTGGACCACTGGGCCCAGGTGACTTCGACCACATCAGTGGTGGCCTCGATCGAC
GACCACGACGGCGGATCCCAACATGACGATGGCAGTGGATCCGGTGCTCTTTTTCATGGTCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis