Browse Element(s) Details


OsAffx.20801.1.S1_at

Description gb:NM_194560.1
DB_XREF= gi:37530479
TID=OsAffx.20801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retrofit (OSJNBa0015O22.26), mRNA.
PROD=putative retrofit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0213011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g189501/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02120Os.46012.3.S1_x_at9/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.46012.2.S1_x_at8/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.27088.1.A1_x_at4/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02120Os.54691.1.S1_x_at1/1110+683496..689374retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02130OsAffx.20801.1.S1_at11/1110+705811..706274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g02140OsAffx.20800.1.S1_at10/1110+708908..709854hypothetical protein
LOC_Os10g02150OsAffx.31069.1.S1_x_at1/1110+717096..720063retrotransposon protein, putative, unclassified
LOC_Os10g02160NANA10+720799..723377retrotransposon protein, putative, unclassified
LOC_Os10g02170NANA10+723804..726822retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20801.1.S1_at--578--7071Chr10:706208..706232 (25 bp)
GTCAACCCGCCTTTCAAGAGTGGTT
LOC_Os10g02130
OsAffx.20801.1.S1_at--1031--10631Chr10:706188..706209 (22 bp)
TTCGCCTCCGACCAACAGGTATGTA
LOC_Os10g02130
OsAffx.20801.1.S1_at--328--2132Chr12:10992101..10992157 (25 bp)
ACAGGTATGTACTCACCCAGGTGGC
LOC_Os12g18950
OsAffx.20801.1.S1_at--681--3471Chr10:706122..706146 (25 bp)
CAGGTGGCTATTGCATCAACGGCGG
LOC_Os10g02130
OsAffx.20801.1.S1_at--236--4711Chr10:706101..706125 (25 bp)
GCGGCGCAAGCATGGCAGCAAATTT
LOC_Os10g02130
OsAffx.20801.1.S1_at--563--5131Chr10:706084..706108 (25 bp)
GCAAATTTGCGCCATGTTCACTACC
LOC_Os10g02130
OsAffx.20801.1.S1_at--1129--10511Chr10:706068..706092 (25 bp)
TTCACTACCCAAACCGAAGCACAGT
LOC_Os10g02130
OsAffx.20801.1.S1_at--649--551Chr10:706035..706059 (25 bp)
ATCCGGCTTATACTCATCAATGCAC
LOC_Os10g02130
OsAffx.20801.1.S1_at--194--5471Chr10:705954..705978 (25 bp)
GAAATTGCTACCTCCAGGAAACCCT
LOC_Os10g02130
OsAffx.20801.1.S1_at--392--5351Chr10:705921..705945 (25 bp)
GAAGACCTACTTGCTTACATTCTGG
LOC_Os10g02130
OsAffx.20801.1.S1_at--87--8511Chr10:705854..705878 (25 bp)
TGGCACGCAATGAGACGGTCACAAT
LOC_Os10g02130
Target Sequence 
GTCAACCCGCCTTTCAAGAGTGGTTCGCCTCCGACCAACAGGTATGTACTCACCCAGGTGGCTATTGCATCAACGGCGGC
GCAAGCATGGCAGCAAATTTGCGCCATGTTCACTACCCAAACCGAAGCACAGTCGCTCAACATCCGGCTTATACTCATCA
ATGCACAAAAAGGTAACATGAGTGTTTCTCAATACTATGGCAAGATGAAAGCTCTCAGGGATGAAATTGCTACCTCCAGG
AAACCCTTAGATGAAGAAGACCTACTTGCTTACATTCTGGATGGGCTAAATGAGGATTTTGAACCTGTTGTATCTGCTAT
TGTGGCACGCAATGAGACGGTCACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis