Browse Element(s) Details


OsAffx.21037.1.S1_at

Description gb:XM_353942.1
DB_XREF= gi:35189317
GEN=OSJNBa0019F11.21
TID=OsAffx.21037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g106101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10560OsAffx.17635.1.S1_at11/119+5763742..5764152hypothetical protein
LOC_Os09g10570OsAffx.17636.1.S1_at10/119+5764327..5769170hypothetical protein
LOC_Os09g10580OsAffx.29793.1.S1_at11/119+5770360..5771539hypothetical protein
LOC_Os09g10600Os.27167.1.S1_at11/119+5780840..5784946Enoyl, chloroplast precursor, putative, expressed
LOC_Os09g10610OsAffx.21037.1.S1_at1/119+5785893..5787455hypothetical protein
LOC_Os09g10620NANA9+5788801..5789358hypothetical protein
LOC_Os09g10630OsAffx.6227.1.S1_at11/119+5792544..5792972hypothetical protein
LOC_Os09g10640NANA9+5795957..5796607retrotransposon protein, putative, LINE subclass
LOC_Os09g10650NANA9+5799256..5805941Phosphatidylinositol-4-phosphate 5-Kinase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21037.1.S1_at--1162--4751Chr06:910400..910424 (25 bp)
GCTGCAGACCAGCAAGCACGTAGGA
NONE
OsAffx.21037.1.S1_at--639--5171Chr06:910411..910435 (25 bp)
GCAAGCACGTAGGACAGGAGCACTA
NONE
OsAffx.21037.1.S1_at--586--3331Chr06:910416..910440 (25 bp)
CACGTAGGACAGGAGCACTACCAGC
NONE
OsAffx.21037.1.S1_at--1044--111Chr06:910441..910857 (25 bp)
ATTCATCCCCGTCCACGTGTCGGGA
NONE
OsAffx.21037.1.S1_at--511--3971Chr06:910848..910872 (25 bp)
CGTGTCGGGACCACGTCGCACGGAT
NONE
OsAffx.21037.1.S1_at--573--5851Chr06:910856..910880 (25 bp)
GACCACGTCGCACGGATGGCGTCCA
NONE
OsAffx.21037.1.S1_at--1160--7012Chr06:910895..910919 (25 bp)
GTAAAATGGGTAGCTTTCAAACACG
NONE
OsAffx.21037.1.S1_at--733--391Chr06:910900..910924 (25 bp)
ATGGGTAGCTTTCAAACACGGGAGA
NONE
OsAffx.21037.1.S1_at--37--10331Chr06:910909..910933 (25 bp)
TTTCAAACACGGGAGAGCGTTCCAG
NONE
OsAffx.21037.1.S1_at--794--2391Chr06:910913..910937 (25 bp)
AAACACGGGAGAGCGTTCCAGCGCG
NONE
OsAffx.21037.1.S1_at--396--6691Chr06:910927..910951 (25 bp)
GTTCCAGCGCGGACCGTGGAGTGGG
NONE
Target Sequence 
GCTGCAGACCAGCAAGCACGTAGGACAGGAGCACTACCAGCATTCATCCCCGTCCACGTGTCGGGACCACGTCGCACGGA
TGGCGTCCAGCGCACGGCGAGGGGTAAAATGGGTAGCTTTCAAACACGGGAGAGCGTTCCAGCGCGGACCGTGGAGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis