Browse Element(s) Details


OsAffx.17636.1.S1_at

Description tigr:9637.m00817
TID=OsAffx.17636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1057010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10530OsAffx.31869.1.S1_at7/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.5.S1_x_at5/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.3.S1_s_at2/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10530OsAffx.31869.2.S1_at1/119+5742398..5743614retrotransposon protein, putative, unclassified
LOC_Os09g10540Os.45173.1.S1_x_at4/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10540OsAffx.18229.1.S1_x_at1/119+5747548..5753807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10550OsAffx.19720.2.S1_s_at11/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.2.S1_at10/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.1.S1_at6/119+5758676..5760466hypothetical protein
LOC_Os09g10560OsAffx.17635.1.S1_at11/119+5763742..5764152hypothetical protein
LOC_Os09g10570OsAffx.17636.1.S1_at10/119+5764327..5769170hypothetical protein
LOC_Os09g10580OsAffx.29793.1.S1_at11/119+5770360..5771539hypothetical protein
LOC_Os09g10600Os.27167.1.S1_at11/119+5780840..5784946Enoyl, chloroplast precursor, putative, expressed
LOC_Os09g10610OsAffx.21037.1.S1_at1/119+5785893..5787455hypothetical protein
LOC_Os09g10620NANA9+5788801..5789358hypothetical protein
LOC_Os09g10630OsAffx.6227.1.S1_at11/119+5792544..5792972hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17636.1.S1_at--1142--2391Chr09:5768685..5768709 (25 bp)
AAACACCTTGGTCGATAGCAACTTA
LOC_Os09g10570
OsAffx.17636.1.S1_at--549--6431Chr09:5766895..5766919 (25 bp)
GATCATTCCAAGCTAGAATCCTCAA
LOC_Os09g10570
OsAffx.17636.1.S1_at--86--10291NONE
TTTCCTGATCTAGGGTATGTGCCAT
NONE
OsAffx.17636.1.S1_at--92--3611Chr09:5765343..5765367 (25 bp)
CATTGAGGGCGGATTCTGATCGCAT
LOC_Os09g10570
OsAffx.17636.1.S1_at--350--9471Chr09:5765329..5765353 (25 bp)
TCTGATCGCATAGGTGGATGTCCAC
LOC_Os09g10570
OsAffx.17636.1.S1_at--1156--4291Chr09:5764613..5764637 (25 bp)
CCTTCCTCAGAGATTGTGTTACCTT
LOC_Os09g10570
OsAffx.17636.1.S1_at--122--6611Chr09:5764602..5764626 (25 bp)
GATTGTGTTACCTTTACAGTCCTAT
LOC_Os09g10570
OsAffx.17636.1.S1_at--45--2131Chr09:5764587..5764611 (25 bp)
ACAGTCCTATTGATCTGGACCCCGT
LOC_Os09g10570
OsAffx.17636.1.S1_at--1015--8511Chr09:5764572..5764596 (25 bp)
TGGACCCCGTCCCAAGTTCTATGGA
LOC_Os09g10570
OsAffx.17636.1.S1_at--320--1231Chr09:5764558..5764582 (25 bp)
AGTTCTATGGATGTTCTGCCGGATA
LOC_Os09g10570
OsAffx.17636.1.S1_at--115--5551Chr09:5764377..5764401 (25 bp)
GAAACGGCGGAAAACACATCTGATT
LOC_Os09g10570
Target Sequence 
AAACACCTTGGTCGATAGCAACTTACCAGAGGAAACAAAGGAATCGAGTGGGCATAAGAAGGTGAAACAACAAGATAGTT
TTGTCGGGACAACAAAGAATGGTCATGTTGATCATTCCAAGCTAGAATCCTCAAATTTTCCTGATCTAGGGTATGTGCCA
TTGAGGGCGGATTCTGATCGCATAGGTGGATGTCCACGTTTGTTTACCCCCTTCCTCAGAGATTGTGTTACCTTTACAGT
CCTATTGATCTGGACCCCGTCCCAAGTTCTATGGATGTTCTGCCGGATAGCACAAAATACTGCTGACCAAGATGCATTGG
GAGATGAGGTGTACATGTGTGACCAGTATGTAGCAAACATGGATTCTGAAACGGCGGAAAACACATCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis