Browse Element(s) Details


Os.27167.1.S1_at

Description gb:AK103141.1
DB_XREF= gi:32988350
TID=Os.27167.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120G12, full insert sequence.
FL= gb:AK103141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1060011/11Enoyl, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10550OsAffx.19720.2.S1_s_at11/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.2.S1_at10/119+5758676..5760466hypothetical protein
LOC_Os09g10550OsAffx.19720.1.S1_at6/119+5758676..5760466hypothetical protein
LOC_Os09g10560OsAffx.17635.1.S1_at11/119+5763742..5764152hypothetical protein
LOC_Os09g10570OsAffx.17636.1.S1_at10/119+5764327..5769170hypothetical protein
LOC_Os09g10580OsAffx.29793.1.S1_at11/119+5770360..5771539hypothetical protein
LOC_Os09g10600Os.27167.1.S1_at11/119+5780840..5784946Enoyl, chloroplast precursor, putative, expressed
LOC_Os09g10610OsAffx.21037.1.S1_at1/119+5785893..5787455hypothetical protein
LOC_Os09g10620NANA9+5788801..5789358hypothetical protein
LOC_Os09g10630OsAffx.6227.1.S1_at11/119+5792544..5792972hypothetical protein
LOC_Os09g10640NANA9+5795957..5796607retrotransposon protein, putative, LINE subclass
LOC_Os09g10650NANA9+5799256..5805941Phosphatidylinositol-4-phosphate 5-Kinase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0005835cellular_componentfatty acid synthase complex
GO:0004318molecular_functionenoyl-[acyl-carrier protein] reductase (NADH) activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016631molecular_functionenoyl-[acyl-carrier protein] reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27167.1.S1_at--912--6851Chr09:5784272..5784296 (25 bp)
GTATTCGTACGTGAACGCACCACTG
LOC_Os09g10600
Os.27167.1.S1_at--943--1511Chr09:5784423..5784447 (25 bp)
AGCAGCATTCTTAGCATCGCCGTTG
LOC_Os09g10600
Os.27167.1.S1_at--697--6611Chr09:5784444..5784468 (25 bp)
GTTGGCATCTGCAATCACTGGATCA
LOC_Os09g10600
Os.27167.1.S1_at--555--5751Chr09:5784537..5784561 (25 bp)
GACGTGTAAACTATTCTCCTGGATG
LOC_Os09g10600
Os.27167.1.S1_at--762--9271Chr09:5784553..5784577 (25 bp)
TCCTGGATGGTTCCGTTTGGTAGCA
LOC_Os09g10600
Os.27167.1.S1_at--709--1231Chr09:5784577..5784601 (25 bp)
AGATGGTCATTAGGCCCCAACTGAA
LOC_Os09g10600
Os.27167.1.S1_at--392--9571Chr09:5784687..5784711 (25 bp)
TCTTCATTTTGGTCTATGCTAGCAA
LOC_Os09g10600
Os.27167.1.S1_at--1019--8791Chr09:5784747..5784771 (25 bp)
TGTTCTTATGTTAGTCCTAGCCTCC
LOC_Os09g10600
Os.27167.1.S1_at--892--3711Chr09:5784763..5784787 (25 bp)
CTAGCCTCCTAGGATCTGATCTGAA
LOC_Os09g10600
Os.27167.1.S1_at--262--8791Chr09:5784862..5784886 (25 bp)
TGTTATCTCTCACTCGGGTTTTATA
LOC_Os09g10600
Os.27167.1.S1_at--1122--8551Chr09:5784920..5784944 (25 bp)
TGGTACATGATCACACAGGTTTTTA
LOC_Os09g10600
Target Sequence 
GTATTCGTACGTGAACGCACCACTGCAGAAGGAGCTCTTGGCAGATGAAGTGGGGAACACAGCAGCATTCTTAGCATCGC
CGTTGGCATCTGCAATCACTGGATCAACTATCTATGTTGACAATGGGCTCAATACAATGGGACTTGCACTTGACAGCCCT
ACACTATCCACATAGACGTGTAAACTATTCTCCTGGATGGTTCCGTTTGGTAGCAGATGGTCATTAGGCCCCAACTGAAG
CTCAAAACCAGATGCTGATATGAAAATGAGGAAAGATGGTAGTTTGAAGATGCAGACTTTCTAGAAAGTTGAGTTACTGG
GTTTTCTTCATTTTGGTCTATGCTAGCAATGAGAATTAGCATTGTAGGAGTACAGTTTGTTGATTGTTCTTATGTTAGTC
CTAGCCTCCTAGGATCTGATCTGAAGAAAGAGAATAATGGAAGTTAAAAAGAACAGGAAATCGAAGTTCTGCCCANNNNG
TTGTTTGTTTTTCGTGTAGTGTTATCTCTCACTCGGGTTTTATAAAAGTTGTAAAAATCTATAGGTATTATAACGTGTGG
TACATGATCACACAGGTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27167.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis