Browse Element(s) Details


OsAffx.21060.1.S1_at

Description tigr:9635.m00060
TID=OsAffx.21060.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0158011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01540Os.34030.1.S1_a_at11/117+333525..342004calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g01550Os.20595.1.S1_a_at11/117+342234..348402Leucine Rich Repeat family protein, expressed
LOC_Os07g01560Os.316.1.S1_at11/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560Os.35004.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01560OsAffx.7485.1.S1_x_at1/117+347493..351985Glucose transporter, putative, expressed
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed
LOC_Os07g01610NANA7+374522..376615retrotransposon protein, putative, unclassified
LOC_Os07g01620Os.16630.1.S1_at11/117+381818..382537Dirigent-like protein, expressed
LOC_Os07g01630Os.27990.1.S1_at10/117+382650..383470Dirigent-like protein, expressed
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21060.1.S1_at--1008--4551Chr07:362934..363049 (25 bp)
GCGCCAGATCAGAAGCTCGCCAACA
LOC_Os07g01580
OsAffx.21060.1.S1_at--1024--1391Chr07:362872..362896 (25 bp)
AGACTGGGATGCCATCGTCAGAATG
LOC_Os07g01580
OsAffx.21060.1.S1_at--560--4431Chr07:362862..362886 (25 bp)
GCCATCGTCAGAATGATAGTGCAAT
LOC_Os07g01580
OsAffx.21060.1.S1_at--747--5131Chr07:362830..362854 (25 bp)
GCAAACCTACAACGTTGTGCCGGAT
LOC_Os07g01580
OsAffx.21060.1.S1_at--895--8171Chr07:362716..362827 (25 bp)
GGAAGATCCTCCATGGGCTCGTCGA
LOC_Os07g01580
OsAffx.21060.1.S1_at--738--9231Chr07:362707..362818 (25 bp)
TCCATGGGCTCGTCGAGTATTCCAT
LOC_Os07g01580
OsAffx.21060.1.S1_at--1135--6071Chr07:362693..362717 (25 bp)
GAGTATTCCATGTGCTCGTCATGAT
LOC_Os07g01580
OsAffx.21060.1.S1_at--547--3511Chr07:362685..362709 (25 bp)
CATGTGCTCGTCATGATCCCTGCTT
LOC_Os07g01580
OsAffx.21060.1.S1_at--277--551Chr07:362670..362694 (25 bp)
ATCCCTGCTTCATTCATCTGTGGTT
LOC_Os07g01580
OsAffx.21060.1.S1_at--315--491Chr07:362655..362679 (25 bp)
ATCTGTGGTTGTAACCTTGGCGAAC
LOC_Os07g01580
OsAffx.21060.1.S1_at--634--2631Chr07:362643..362667 (25 bp)
AACCTTGGCGAACGGATATACCACG
LOC_Os07g01580
Target Sequence 
GCGCCAGATCAGAAGCTCGCCAACAAGATGATGAAGAAGAAGCTGCAGGATGAGCAGCAGCAAGACTGGGATGCCATCGT
CAGAATGATAGTGCAATCAAAGATGCAAACCTACAACGTTGTGCCGGATGGGGAAGATCCTCCATGGGCTCGTCGAGTAT
TCCATGTGCTCGTCATGATCCCTGCTTCATTCATCTGTGGTTGTAACCTTGGCGAACGGATATACCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis