Browse Element(s) Details


OsAffx.21062.1.S1_x_at

Description gb:NM_194219.1
DB_XREF= gi:34915475
TID=OsAffx.21062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0446F04.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1633011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16270Os.53610.1.S1_at11/112+9257996..9262612NB-ARC domain containing protein, expressed
LOC_Os02g16280OsAffx.25367.1.S1_at1/112+9263254..9267577retrotransposon, putative, centromere-specific
LOC_Os02g16290OsAffx.28402.1.S1_at1/112+9268756..9272208transposon protein, putative, Mutator sub-class
LOC_Os02g16300NANA2+9272554..9274078expressed protein
LOC_Os02g16310OsAffx.31695.1.S1_at2/112+9277216..9278748hypothetical protein
LOC_Os02g16320NANA2+9280471..9281274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16330OsAffx.21062.1.S1_at11/112+9284786..9290815NB-ARC domain containing protein
LOC_Os02g16330OsAffx.21062.1.S1_x_at11/112+9284786..9290815NB-ARC domain containing protein
LOC_Os02g16340OsAffx.22896.1.S1_x_at1/112+9297369..9297818retrotransposon protein, putative, unclassified
LOC_Os02g16350NANA2+9303208..9305565retrotransposon protein, putative, unclassified
LOC_Os02g16360NANA2+9313714..9317613retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21062.1.S1_x_at--1157--2173Chr02:9287835..9287859 (25 bp)
ACACTCGCATGCTATCACGTATGGG
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--184--2736Chr12:1904407..1904431 (25 bp)
AAGCAGCACAGAGCACTGGAGCAGC
NONE
OsAffx.21062.1.S1_x_at--336--5116Chr12:1904412..1904751 (25 bp)
GCACAGAGCACTGGAGCAGCAACAT
NONE
OsAffx.21062.1.S1_x_at--50--5953Chr02:9287884..9287908 (25 bp)
GAGCACTGGAGCAGCAACATCAGCT
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--604--8073Chr02:9287891..9287915 (25 bp)
GGAGCAGCAACATCAGCTCTGCAGT
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--159--3273Chr02:9287898..9287922 (25 bp)
CAACATCAGCTCTGCAGTTGCTGTG
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--1113--393Chr02:9287902..9287926 (25 bp)
ATCAGCTCTGCAGTTGCTGTGTGTC
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--707--5033Chr02:9287911..9287935 (25 bp)
GCAGTTGCTGTGTGTCTCTGAGATA
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--1049--1233Chr02:9287913..9287937 (25 bp)
AGTTGCTGTGTGTCTCTGAGATAGT
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--435--4733Chr02:9287917..9287941 (25 bp)
GCTGTGTGTCTCTGAGATAGTTGAA
LOC_Os02g16330
OsAffx.21062.1.S1_x_at--355--7473Chr02:9287920..9287944 (25 bp)
GTGTGTCTCTGAGATAGTTGAACGA
LOC_Os02g16330
Target Sequence 
ACACTCGCATGCTATCACGTATGGGGAGAGAGGAAGGGGAAGCAGCACAGAGCACTGGAGCAGCAACATCAGCTCTGCAG
TTGCTGTGTGTCTCTGAGATAGTTGAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21062.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis