Browse Element(s) Details


OsAffx.21182.1.S1_at

Description gb:NM_193647.1
DB_XREF= gi:34914377
GEN=B1168H06.8
TID=OsAffx.21182.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.8 (B1168H06.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3352011/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g250102/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21182.1.S1_at--697--4271Chr01:18777943..18777967 (25 bp)
CCTGACCGTGTTTTGGTGAGATTGG
LOC_Os01g33520
OsAffx.21182.1.S1_at--491--6611Chr01:18777924..18777948 (25 bp)
GATTGGAAGGATTGCTCCTTACAAG
LOC_Os01g33520
OsAffx.21182.1.S1_at--29--1031Chr01:18777901..18777925 (25 bp)
AGGGAACAATTGCAACCGTTGACAA
LOC_Os01g33520
OsAffx.21182.1.S1_at--870--6652Chr05:14397410..14397432 (23 bp)
GTTGACAAATCGGTTCTTGCCCGAT
LOC_Os05g25010
OsAffx.21182.1.S1_at--772--7892Chr05:14397419..14397443 (25 bp)
GGTTCTTGCCCGATGGTGAAGCTAG
LOC_Os05g25010
OsAffx.21182.1.S1_at--109--9171Chr01:18777867..18777891 (25 bp)
TGCCCGATGGTGAAGCTAGATATGT
LOC_Os01g33520
OsAffx.21182.1.S1_at--815--5391Chr01:18777857..18777880 (24 bp)
GAAGCTAGATATGTTATTGACGAAA
LOC_Os01g33520
OsAffx.21182.1.S1_at--973--6791Chr01:18777771..18777868 (25 bp)
GTTATTGACGAAATCATCGACACAT
LOC_Os01g33520
OsAffx.21182.1.S1_at--181--1751Chr01:18777407..18777431 (25 bp)
ACCTAGCACCGGTAAACAAGACACG
LOC_Os01g33520
OsAffx.21182.1.S1_at--852--2451Chr01:18777393..18777417 (25 bp)
AACAAGACACGGAACTGACATTAGT
LOC_Os01g33520
OsAffx.21182.1.S1_at--355--1971Chr01:18776923..18777404 (25 bp)
ACTGACATTAGTGGGTGATATAGAC
LOC_Os01g33520
Target Sequence 
CCTGACCGTGTTTTGGTGAGATTGGAAGGATTGCTCCTTACAAGGGAACAATTGCAACCGTTGACAAATCGGTTCTTGCC
CGATGGTGAAGCTAGATATGTTATTGACGAAATCATCGACACATACATAATGTACCTGGAACATAAATACCTTGAAGAGT
CACAAGCTCGCAGAAGAGTATATATGATGAAAACGTTCATCACAGGTAAAATATCGATTGACTGCGTGCACGAAATCTCC
AAGCGGCAGTTGGAAAAGGGATATATATCAAGAATTACTAACCAAATTGCCCAGAACGAACAGATCTTTATCCCTATAAA
TAGAAATAAGAATCATTGGTACCTGGCTGTCGTCCATGTTAAGCAACGCCAGATTCAACTACTGGACTCATCACCTAGCA
CCGGTAAACAAGACACGGAACTGACATTAGTGGGTGATATAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21182.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis