Browse Element(s) Details


OsAffx.21269.1.S1_x_at

Description gb:NM_193265.1
DB_XREF= gi:34913613
GEN=P0014E04.32
TID=OsAffx.21269.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0014E04.32 (P0014E04.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g249202/11retrotransposon protein, putative, unclassified
LOC_Os09g064302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g031801/11transposon protein, putative, Mutator sub-class
LOC_Os03g431501/11retrotransposon protein, putative, unclassified
LOC_Os01g292001/11retrotransposon protein, putative, unclassified
LOC_Os09g032401/11retrotransposon protein, putative, unclassified
LOC_Os03g431801/11retrotransposon protein, putative, unclassified
LOC_Os07g163601/11retrotransposon protein, putative, unclassified
LOC_Os04g277001/11expressed protein
LOC_Os06g277201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g168241/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g208901/11retrotransposon, putative, centromere-specific
LOC_Os08g197501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g188901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24870NANA7+14141672..14142154hypothetical protein
LOC_Os07g24880OsAffx.661.1.S1_x_at1/117+14146564..14150017transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24890NANA7+14153734..14154396hypothetical protein
LOC_Os07g24900NANA7+14156619..14158660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24910Os.51869.1.S1_at2/117+14159219..14164496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24920OsAffx.3496.1.S1_x_at3/117+14165693..14166088retrotransposon protein, putative, unclassified
LOC_Os07g24920OsAffx.21269.1.S1_x_at2/117+14165693..14166088retrotransposon protein, putative, unclassified
LOC_Os07g24930NANA7+14174616..14175065retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24940Os.10827.1.S1_x_at7/117+14188114..14192098transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24940Os.46055.2.S1_x_at4/117+14188114..14192098transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g24940Os.6645.1.S1_s_at1/117+14188114..14192098transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21269.1.S1_x_at--306--105124Chr11:8026704..8026833 (25 bp)
TTCACAGTCTGGCACCCCGTAATGA
NONE
OsAffx.21269.1.S1_x_at--352--82533Chr12:9080042..9080066 (25 bp)
GGCACCCCGTAATGAATCATGCTAT
NONE
OsAffx.21269.1.S1_x_at--645--631NONE
ATGCTATACAAAAGAGGACAACGAC
NONE
OsAffx.21269.1.S1_x_at--879--2193Chr05:19819684..19819933 (25 bp)
ACAAAAGAGGACAACGACGCGAACT
NONE
OsAffx.21269.1.S1_x_at--553--41119Chr09:1561406..1561429 (24 bp)
CGAACTCACCGGTGCAAGAAACTAT
LOC_Os09g03240
OsAffx.21269.1.S1_x_at--295--5174Chr07:14165788..14165812 (25 bp)
GCAAGAAACTATGACGGACGACGAC
LOC_Os07g24920
OsAffx.21269.1.S1_x_at--130--36920Chr12:11844373..11844393 (21 bp)
CTATGACGGACGACGACGAACGACG
NONE
OsAffx.21269.1.S1_x_at--924--4691Chr01:20003796..20003820 (25 bp)
GCGGCGCTCCAGTGGCTTGCGACAA
NONE
OsAffx.21269.1.S1_x_at--500--4331Chr01:20003788..20003812 (25 bp)
CCAGTGGCTTGCGACAACGGCGAAG
NONE
OsAffx.21269.1.S1_x_at--133--3931Chr01:20003760..20003784 (25 bp)
CGGCCGAGGTACTCCTCTGTGCGCA
NONE
OsAffx.21269.1.S1_x_at--949--6151Chr01:20003755..20003779 (25 bp)
GAGGTACTCCTCTGTGCGCACCCGA
NONE
Target Sequence 
TTCACAGTCTGGCACCCCGTAATGAATCATGCTATACAAAAGAGGACAACGACGCGAACTCACCGGTGCAAGAAACTATG
ACGGACGACGACGAACGACGGCCGGCGACGAGGTCCAACGGCGGCTCGGCTCGGGTCGGCGGCGGCGGCGGCGCTCCAGT
GGCTTGCGACAACGGCGAAGGGGCGGCCGAGGTACTCCTCTGTGCGCACCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis