Browse Element(s) Details


OsAffx.2139.2.S1_at

Description tigr:9629.m03140
TID=OsAffx.2139.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3351011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2139.2.S1_at--812--4891Chr01:18771357..18771381 (25 bp)
GCTTCGTTTCTCTCACCACGTAGGG
LOC_Os01g33510
OsAffx.2139.2.S1_at--247--7571Chr01:18771388..18771412 (25 bp)
GGGCTGCTCGGAACCGTCCAGATCT
LOC_Os01g33510
OsAffx.2139.2.S1_at--430--9091Chr01:18771392..18771416 (25 bp)
TGCTCGGAACCGTCCAGATCTGTGC
LOC_Os01g33510
OsAffx.2139.2.S1_at--1158--5431Chr01:18771398..18771422 (25 bp)
GAACCGTCCAGATCTGTGCCGTCTG
LOC_Os01g33510
OsAffx.2139.2.S1_at--156--491Chr01:18771409..18771433 (25 bp)
ATCTGTGCCGTCTGGCTGGATCTAG
LOC_Os01g33510
OsAffx.2139.2.S1_at--53--4511Chr01:18771415..18771439 (25 bp)
GCCGTCTGGCTGGATCTAGTGAGGA
LOC_Os01g33510
OsAffx.2139.2.S1_at--122--4231Chr01:18771571..18771595 (25 bp)
CCGACTCCGCGACGGTTGGATCTGG
LOC_Os01g33510
OsAffx.2139.2.S1_at--459--7691Chr01:18771611..18771635 (25 bp)
GGGTGGTGGGAGCATCCATGGATAC
LOC_Os01g33510
OsAffx.2139.2.S1_at--505--3891Chr01:18771647..18771671 (25 bp)
CTGTGGGCGACGGAAGCAGCGGTTG
LOC_Os01g33510
OsAffx.2139.2.S1_at--289--5811Chr01:18771740..18771764 (25 bp)
GACGCGAAGGCCTCGGAGACCGCAA
LOC_Os01g33510
OsAffx.2139.2.S1_at--715--2951Chr01:18771746..18771770 (25 bp)
AAGGCCTCGGAGACCGCAATGGCGA
LOC_Os01g33510
Target Sequence 
GCTTCGTTTCTCTCACCACGTAGGGGCAGGGGGGCTGCTCGGAACCGTCCAGATCTGTGCCGTCTGGCTGGATCTAGTGA
GGAGGAAGTCGGTGGTGGGGCGGTGCCCGGTGGCGTGACGGCGGGCGAGGTCCGACTCCGCGACGGTTGGATCTGGCCGG
ACGATGACAGGGGGTGGTGGGAGCATCCATGGATACGGCGGCCGGTGCTGTGGGCGACGGAAGCAGCGGTTGGCGGGGAT
GGTGCGACAGCGAGGAGGCCAGCGGAGGCACATGCGACCGGCGCGGAGGCACATGCGACCGACGCGAAGGCCTCGGAGAC
CGCAATGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2139.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis