Browse Element(s) Details


OsAffx.21482.1.S1_at

Description gb:NM_192197.1
DB_XREF= gi:34911477
GEN=P0454A11.13
TID=OsAffx.21482.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0454A11.13 (P0454A11.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g504308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50460Os.2019.1.S1_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50460Os.2019.2.S1_x_at11/111+29302412..29304191MtN3/saliva family protein, expressed
LOC_Os01g50470Os.53943.1.S1_at11/111+29304966..29310713regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21482.1.S1_at--138--7531Chr01:29279685..29279709 (25 bp)
GTGGAACGTGGTGGAATCCCTCATC
LOC_Os01g50430
OsAffx.21482.1.S1_at--741--10391Chr01:29279729..29279753 (25 bp)
TTTTCCGCTCGTCGCGAGTCGAGAA
LOC_Os01g50430
OsAffx.21482.1.S1_at--861--3211Chr01:29280288..29280312 (25 bp)
CAAGGGAGACGGTGGATGTACTACA
LOC_Os01g50430
OsAffx.21482.1.S1_at--492--7991Chr01:29280301..29280325 (25 bp)
GGATGTACTACACCCGAGCTCAAGG
LOC_Os01g50430
OsAffx.21482.1.S1_at--474--551Chr01:29280350..29280374 (25 bp)
ATCCCCATGCAGTTTGCCAGGTCAG
LOC_Os01g50430
OsAffx.21482.1.S1_at--455--6851Chr01:29280361..29280385 (25 bp)
GTTTGCCAGGTCAGAGCCAGAGATG
LOC_Os01g50430
OsAffx.21482.1.S1_at--808--9111Chr01:29280580..29280604 (25 bp)
TGCTGCTCTGGCTCAACGCGGTCTA
LOC_Os01g50430
OsAffx.21482.1.S1_at--1139--7791Chr01:29280599..29280623 (25 bp)
GGTCTACGGCGCAATGGAGTCCTCG
LOC_Os01g50430
OsAffx.21482.1.S1_at--855--511Chr01:29280638..29280662 (25 bp)
ATCGATGCCCTTGAGCACATGTTGG
NONE
OsAffx.21482.1.S1_at--630--10771Chr01:29280648..29280672 (25 bp)
TTGAGCACATGTTGGTGGCACCCGT
NONE
OsAffx.21482.1.S1_at--455--7531Chr01:29280662..29280686 (25 bp)
GTGGCACCCGTGGTTGCCAACGACG
NONE
Target Sequence 
GTGGAACGTGGTGGAATCCCTCATCCCGCGGTCGCGGCCCTTCGTTTTCCGCTCGTCGCGAGTCGAGAAGCGCATGNNNG
ANGNNGGNGATNNNNNNNCNNNNNNNNGGNNNNGTGNNATNNNGNNNNGGTCGGCCAAGGGAGACGGTGGATGTACTACA
CCCGAGCTCAAGGAGGAGCAGGGCGAGGCCGGCGTCCATCCCCATGCAGTTTGCCAGGTCAGAGCCAGAGATGGAGACGA
AGATGAAGGGGGGAAGATTGAGAGGGAGGTGGCAGCGAGGGGGTTCCTGGCGACGAGGATGGTGTGGGAGGTGCGCGTGG
TGGAGGCGGAGGCGGAGAAGGTGGCGAGGAAGGTGGAGGCCGAGGCGAAGGCGCTGAGGCGGAACNNNNNNNNNNNNNNN
NNNNNNNNNNCGAGGTTCTCATGCGGCTGCTGCTCTGGCTCAACGCGGTCTACGGCGCAATGGAGTCCTCGCGCTGCAGG
ACACCATCGATGCCCTTGAGCACATGTTGGTGGCACCCGTGGTTGCCAACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis