Browse Element(s) Details


OsAffx.21532.1.S1_at

Description gb:NM_191804.1
DB_XREF= gi:34910691
GEN=P0690B02.10
TID=OsAffx.21532.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0690B02.10 (P0690B02.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5228011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52330NANA1+30402471..30403973NB-ARC domain containing protein, expressed
LOC_Os01g52340Os.18053.1.S1_at11/111+30406496..30408328NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21532.1.S1_at--183--8171Chr01:30383341..30383365 (25 bp)
GGAACAACTCAACCTCTTGAGCTAA
LOC_Os01g52280
OsAffx.21532.1.S1_at--920--1571Chr01:30383360..30383384 (25 bp)
AGCTAAGTTTGTTGCCTCAGGAGGC
LOC_Os01g52280
OsAffx.21532.1.S1_at--1061--3451Chr01:30383377..30383401 (25 bp)
CAGGAGGCCCATTGGTACTTCTTCA
LOC_Os01g52280
OsAffx.21532.1.S1_at--78--9491Chr01:30383408..30383432 (25 bp)
TTGCCTTTGGAAGCACAAACCCTGT
LOC_Os01g52280
OsAffx.21532.1.S1_at--703--8071Chr01:30383433..30383457 (25 bp)
GGAGCACCCATTTCTAGAATCAGCA
LOC_Os01g52280
OsAffx.21532.1.S1_at--796--6951Chr01:30383491..30383515 (25 bp)
GTAGCTGCTAATTTCGTTGCTTCAT
LOC_Os01g52280
OsAffx.21532.1.S1_at--887--8611Chr01:30383601..30383625 (25 bp)
TGGTGAACATCCATACACTCTTGTT
LOC_Os01g52280
OsAffx.21532.1.S1_at--686--7651Chr01:30383663..30383687 (25 bp)
GGGATCCAAAATTCATTCTAGTCAA
LOC_Os01g52280
OsAffx.21532.1.S1_at--271--7271Chr01:30383740..30383764 (25 bp)
GTCCATACTGGAACTTCTAAAGCTC
LOC_Os01g52280
OsAffx.21532.1.S1_at--468--7791Chr01:30383778..30383802 (25 bp)
GGTCCTAGTATGGAGATCACGCATA
LOC_Os01g52280
OsAffx.21532.1.S1_at--641--311Chr01:30383800..30383824 (25 bp)
ATACCTCCCTACCATGAGTTCGTAA
LOC_Os01g52280
Target Sequence 
GGAACAACTCAACCTCTTGAGCTAAGTTTGTTGCCTCAGGAGGCCCATTGGTACTTCTTCAAGGTGCTTGCCTTTGGAAG
CACAAACCCTGTGGAGCACCCATTTCTAGAATCAGCAGCTATGGAAATGGCAGCAGAGTACAGATGTTTTGTAGCTGCTA
ATTTCGTTGCTTCATTATTCAGAGCTAATTTTTGCACCCAGTTTTGGCATTTGTTCCTTAGATGTCACAGAAACATCGTT
GAGAAACATGTCATTCTATTTGGTGAACATCCATACACTCTTGTTCAAAAAAATCACGGTATATATCTTGTTGAAAATTT
TAGGGATCCAAAATTCATTCTAGTCAATGGCTATAAAACATGTCTCAGGGATGATGATCCTAAGGTAATGCTACATGAAG
TCCATACTGGAACTTCTAAAGCTCATGGAAAATTTGAGGTCCTAGTATGGAGATCACGCATACCTCCCTACCATGAGTTC
GTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis