Browse Element(s) Details


OsAffx.21536.1.S1_at

Description tigr:9629.m05049
TID=OsAffx.21536.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cation channel family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5207011/11cation channel family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52050Os.15135.1.S1_at11/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52050OsAffx.6027.1.S1_at1/111+30254432..30258299Brassinosteroid LRR receptor kinase precursor, putative, expressed
LOC_Os01g52060Os.28578.1.S1_at2/111+30264395..30264722expressed protein
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0005886cellular_componentplasma membrane
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21536.1.S1_at--1064--8011Chr01:30274265..30274289 (25 bp)
GGAGGTATTGACAACCCTTGAGGAT
LOC_Os01g52070
OsAffx.21536.1.S1_at--1049--9791Chr01:30274882..30274906 (25 bp)
TAAGCCACAGCCATATGGTCTCGAC
LOC_Os01g52070
OsAffx.21536.1.S1_at--468--7691Chr01:30274930..30274954 (25 bp)
GGGTCGTTGTATTCTCCAATTTTGT
LOC_Os01g52070
OsAffx.21536.1.S1_at--17--8811Chr01:30274952..30275049 (25 bp)
TGTTCTGTACCTTGAATCTCTGAAG
LOC_Os01g52070
OsAffx.21536.1.S1_at--235--5531Chr01:30275062..30275086 (25 bp)
GAAACAGCCTTTGTTAGGGATCATC
LOC_Os01g52070
OsAffx.21536.1.S1_at--520--1071Chr01:30275077..30275101 (25 bp)
AGGGATCATCTTCGCAATGGCTACT
LOC_Os01g52070
OsAffx.21536.1.S1_at--628--1291Chr01:30275092..30275116 (25 bp)
AATGGCTACTCCACGGTATTAGGAA
LOC_Os01g52070
OsAffx.21536.1.S1_at--485--6091Chr01:30275149..30275173 (25 bp)
GAGTCAGCTCACAAAATGTTGCCAT
LOC_Os01g52070
OsAffx.21536.1.S1_at--948--5471Chr01:30275203..30275227 (25 bp)
GAACACCTCTTAAATGGGACTGGCA
LOC_Os01g52070
OsAffx.21536.1.S1_at--1120--1491Chr01:30275229..30275253 (25 bp)
AGCACTGAACGGCTCATCTGGGAAG
LOC_Os01g52070
OsAffx.21536.1.S1_at--104--8651Chr01:30275247..30275271 (25 bp)
TGGGAAGCTCGTCATACTGCCAGAT
LOC_Os01g52070
Target Sequence 
GGAGGTATTGACAACCCTTGAGGATGGTACAGAGAAGCAAGTGATGAGAATAGGGCCACGGGGAATGGCAGGGGAAATTG
GGGTGATGTTCAACATCCCACAGCCGTTCACCATCCGGAGCAGAAAGCTCACGCAGCTCGTCCGTATAAGCCACAGCCAT
ATGGTCTCGACCATCCGGCCTAACACTGCAGATGGGGTCGTTGTATTCTCCAATTTTGTTCTGTACCTTGAATCTCTGAA
GGTGAAGGCAAAGGAAACAGCCTTTGTTAGGGATCATCTTCGCAATGGCTACTCCACGGTATTAGGAAGTGCAACCATGT
TTGATGTAGATGAATCCAAAGAGTCAGCTCACAAAATGTTGCCATGCAAAGAACCCAAACGGGTATCTATTCATGAACAC
CTCTTAAATGGGACTGGCACAGCACTGAACGGCTCATCTGGGAAGCTCGTCATACTGCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis