Browse Element(s) Details


OsAffx.21556.1.S1_at

Description tigr:9629.m04950
TID=OsAffx.21556.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g511103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51060Os.18272.1.S1_x_at11/111+29653536..29661639IAA-amino acid hydrolase homolog 2 precursor, putative, expressed
LOC_Os01g51070OsAffx.11556.1.S1_at11/111+29665161..29665680hypothetical protein
LOC_Os01g51080NANA1+29672292..29675071retrotransposon protein, putative, unclassified
LOC_Os01g51090NANA1+29675556..29678446retrotransposon protein, putative, unclassified
LOC_Os01g51100NANA1+29679530..29682362retrotransposon protein, putative, unclassified
LOC_Os01g51110OsAffx.21556.1.S1_at3/111+29684385..29684902hypothetical protein
LOC_Os01g51120Os.7165.1.S1_at11/111+29691374..29694876Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g51120Os.37895.1.S1_x_at9/111+29691374..29694876Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g51130OsAffx.13097.1.S1_s_at11/111+29696595..29702970transposon protein, putative, Mutator sub-class
LOC_Os01g51140Os.25546.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51140Os.32078.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21556.1.S1_at--577--8411Chr01:29684118..29684142 (25 bp)
GGCCCATTGGGCAGCATAATCAGCG
NONE
OsAffx.21556.1.S1_at--29--31Chr01:29684123..29684299 (25 bp)
ATTGGGCAGCATAATCAGCGCGAGC
NONE
OsAffx.21556.1.S1_at--896--9751Chr01:29684134..29684314 (25 bp)
TAATCAGCGCGAGCGGAACGACAGT
NONE
OsAffx.21556.1.S1_at--676--1851Chr01:29684307..29684331 (25 bp)
ACGACAGTGGTCTGGCGAGCGAACT
NONE
OsAffx.21556.1.S1_at--337--3471Chr01:29684311..29684335 (25 bp)
CAGTGGTCTGGCGAGCGAACTTTGC
NONE
OsAffx.21556.1.S1_at--798--9451Chr01:29684317..29684341 (25 bp)
TCTGGCGAGCGAACTTTGCCGGCTG
NONE
OsAffx.21556.1.S1_at--612--6131Chr01:29684354..29684378 (25 bp)
GAGGGCAGCACCAAGCCATGCCACG
NONE
OsAffx.21556.1.S1_at--430--591Chr01:29684371..29684395 (25 bp)
ATGCCACGGCATCGATGGTCCGGCC
NONE
OsAffx.21556.1.S1_at--794--4651Chr01:29684402..29684426 (25 bp)
GCGTGCAAATGGTGACGAGCACCGA
LOC_Os01g51110
OsAffx.21556.1.S1_at--595--8931Chr01:29684414..29684438 (25 bp)
TGACGAGCACCGAGTGGCCCGGACC
LOC_Os01g51110
OsAffx.21556.1.S1_at--715--4911Chr01:29684470..29684494 (25 bp)
GCTTCCCGTCTCTGGCAAGGGATGG
LOC_Os01g51110
Target Sequence 
GGCCCATTGGGCAGCATAATCAGCGCGAGCGGAACGACAGTGGTCTGGCGAGCGAACTTTGCCGGCTGGGGGGCGCACCC
GAGGGCAGCACCAAGCCATGCCACGGCATCGATGGTCCGGCCAGGCGGGCGTGCAAATGGTGACGAGCACCGAGTGGCCC
GGACCTCGTCGGCGGGAGGGGCGACGCCAAGCCGACGCTTCCCGTCTCTGGCAAGGGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis