Browse Element(s) Details


OsAffx.21632.1.S1_at

Description tigr:9629.m05278
TID=OsAffx.21632.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5414011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21632.1.S1_at--809--1831Chr01:31463606..31463630 (25 bp)
ACGCGTCGCTCTGCGACAGGTTCAA
LOC_Os01g54140
OsAffx.21632.1.S1_at--85--9171Chr01:31463537..31463561 (25 bp)
TGCGCGACATCGCAAGGACCAACTG
LOC_Os01g54140
OsAffx.21632.1.S1_at--962--4451Chr01:31463465..31463487 (23 bp)
GCCTCCAAGCAGATCGGCAGGGTTA
LOC_Os01g54140
OsAffx.21632.1.S1_at--129--5591Chr01:31463278..31463301 (24 bp)
GAAATTTCGCTGATTATTTTGGTAA
LOC_Os01g54140
OsAffx.21632.1.S1_at--1119--7111Chr01:31461282..31461306 (25 bp)
GTCATGGTGATTATATTGGCACTGT
LOC_Os01g54140
OsAffx.21632.1.S1_at--1009--6771Chr01:31461236..31461260 (25 bp)
GTTTCAAGGGTATGACGGTCTGGCC
LOC_Os01g54140
OsAffx.21632.1.S1_at--789--3911Chr01:31461217..31461241 (25 bp)
CTGGCCGGGCAGCTATTGGAACAAC
LOC_Os01g54140
OsAffx.21632.1.S1_at--272--8511Chr01:31461201..31461225 (25 bp)
TGGAACAACCATCTTAATCACGCCT
LOC_Os01g54140
OsAffx.21632.1.S1_at--989--9731Chr01:31461187..31461211 (25 bp)
TAATCACGCCTTGGTACTTACTGAC
LOC_Os01g54140
OsAffx.21632.1.S1_at--442--6891Chr01:31461175..31461199 (25 bp)
GGTACTTACTGACCCTCTAAGGGCA
LOC_Os01g54140
OsAffx.21632.1.S1_at--593--1071Chr01:31461156..31461180 (25 bp)
AGGGCAATGCCAGTTTTAAGAGACA
LOC_Os01g54140
Target Sequence 
ACGCGTCGCTCTGCGACAGGTTCAACCGCACCGTGCGGCTCAACCCCACGCTGTCGCTCGTGCGCTCCATGCGCGACATC
GCAAGGACCAACTGCCTCAGCCGGCATCGCTCCGCGCGAGCGGATGCCTGCGCCGCCGGTGGCGCCTCCAAGCAGATCGG
CAGGGTTAAAGAAATTTCGCTGATTATTTTGGTAATTGTCATGGTGATTATATTGGCACTGTATATTGTTCTTGTAACCA
TTTGTTTCAAGGGTATGACGGTCTGGCCGGGCAGCTATTGGAACAACCATCTTAATCACGCCTTGGTACTTACTGACCCT
CTAAGGGCAATGCCAGTTTTAAGAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis