Browse Element(s) Details


Os.7493.1.S1_at

Description gb:AK102819.1
DB_XREF= gi:32988028
TID=Os.7493.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7493 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, sequence homologous to casein kinase 1-gamma gene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108N21, full insert sequence.
FL= gb:AK102819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5410011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7493.1.S1_at--617--791Chr01:31438518..31438542 (25 bp)
ATGGTCCAAGAATCTCTACCTTGCA
LOC_Os01g54100
Os.7493.1.S1_at--656--5251Chr01:31438509..31438533 (25 bp)
GAATCTCTACCTTGCATCAGTATGC
LOC_Os01g54100
Os.7493.1.S1_at--853--6911Chr01:31438490..31438514 (25 bp)
GTATGCTATGGACGTACTGTATCCT
LOC_Os01g54100
Os.7493.1.S1_at--1042--1951Chr01:31438475..31438499 (25 bp)
ACTGTATCCTAGAAATCTGGCCATC
LOC_Os01g54100
Os.7493.1.S1_at--771--2971Chr01:31438276..31438300 (25 bp)
AATGTTTTTGTAGTTCGTGTAATCG
LOC_Os01g54100
Os.7493.1.S1_at--1022--6711Chr01:31438264..31438288 (25 bp)
GTTCGTGTAATCGTTCATGTAGTGT
LOC_Os01g54100
Os.7493.1.S1_at--588--10491Chr01:31438235..31438259 (25 bp)
TTAATTGTAGTGCAAGGCGTTGTCA
LOC_Os01g54100
Os.7493.1.S1_at--887--8371Chr01:31438220..31438244 (25 bp)
GGCGTTGTCAGATGTGTACACCTGT
LOC_Os01g54100
Os.7493.1.S1_at--251--6271Chr01:31438210..31438234 (25 bp)
GATGTGTACACCTGTCCGATATGAT
LOC_Os01g54100
Os.7493.1.S1_at--202--1771Chr01:31438201..31438225 (25 bp)
ACCTGTCCGATATGATTGAACTCCT
LOC_Os01g54100
Os.7493.1.S1_at--989--51Chr01:31438187..31438211 (25 bp)
ATTGAACTCCTATCTAATCGTGTGA
LOC_Os01g54100
Target Sequence 
ATGGTCCAAGAATCTCTACCTTGCATCAGTATGCTATGGACGTACTGTATCCTAGAAATCTGGCCATCTAGTTGAAGCCA
TTTCGAGTTCTAGGCTTCTAGCATTGGTCTCTGCTCAGAGTGCAGCGGCTTATGTGATGCTGGCAAGTTCTGAATGCGAC
TTAGCGTACCCTGACTATCGTGCTGTCGTGAAGATATTTAATGGCTATCGTTCTTAATTATAGAAGAGCTTGTACAGTAG
TAAATGTTTTTGTAGTTCGTGTAATCGTTCATGTAGTGTACTGTTAATTGTAGTGCAAGGCGTTGTCAGATGTGTACACC
TGTCCGATATGATTGAACTCCTATCTAATCGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis