Browse Element(s) Details


OsAffx.21635.2.S1_at

Description tigr:9629.m05269
TID=OsAffx.21635.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5405011/11Histidine-containing phosphotransfer protein 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0007165biological_processsignal transduction
GO:0009736biological_processcytokinin mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016772molecular_functiontransferase activity, transferring phosphorus-containing groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21635.2.S1_at--301--2691Chr01:31420359..31420518 (25 bp)
AAGCTCTGGAGAAGTACCCAAGAGA
LOC_Os01g54050
OsAffx.21635.2.S1_at--368--5331Chr01:31420504..31420528 (25 bp)
GAAGTACCCAAGAGATTTCAACAGG
LOC_Os01g54050
OsAffx.21635.2.S1_at--479--2491Chr01:31420523..31420547 (25 bp)
AACAGGTGGGATACATATATGCAGC
LOC_Os01g54050
OsAffx.21635.2.S1_at--107--2531Chr01:31420548..31420569 (22 bp)
AACTAAAAGGCAGCTGTTCCAGCAT
LOC_Os01g54050
OsAffx.21635.2.S1_at--264--3411Chr01:31421119..31421143 (25 bp)
CAGCATCGGCGCTTCTAGGATGAAG
LOC_Os01g54050
OsAffx.21635.2.S1_at--501--5271Chr01:31421143..31421167 (25 bp)
GAATGAGTGCATGTCGTTCAGGGAT
LOC_Os01g54050
OsAffx.21635.2.S1_at--348--7191Chr01:31421155..31421179 (25 bp)
GTCGTTCAGGGATAGTTGTGGCCAA
LOC_Os01g54050
OsAffx.21635.2.S1_at--66--731Chr01:31421184..31421331 (25 bp)
ATGTTGAAGGTTGCATGAGGTCTTT
LOC_Os01g54050
OsAffx.21635.2.S1_at--976--5251Chr01:31421375..31421500 (25 bp)
GAATCCTATTTCCAGCTGCTAAGAC
LOC_Os01g54050
OsAffx.21635.2.S1_at--29--9091Chr01:31421492..31421516 (25 bp)
TGCTAAGACAAGCTGGCCCCGCTGG
LOC_Os01g54050
OsAffx.21635.2.S1_at--429--8471Chr01:31421505..31421529 (25 bp)
TGGCCCCGCTGGAGCTGCCACTAGG
LOC_Os01g54050
Target Sequence 
AAGCTCTGGAGAAGTACCCAAGAGATTTCAACAGGTGGGATACATATATGCAGCAACTAAAAGGCAGCTGTTCCAGCATC
GGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTGTGGCCAAGGAAATGTTGAAGGTTGCATGAGGTC
TTTCCAGAAAGTGAAGCGGGAGCATGCTGTCCTGAGGCAGAAACTAGAATCCTATTTCCAGCTGCTAAGACAAGCTGGCC
CCGCTGGAGCTGCCACTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21635.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis