Browse Element(s) Details


Os.14456.1.S1_at

Description gb:AK069114.1
DB_XREF= gi:32979138
TID=Os.14456.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007H03, full insert sequence.
FL= gb:AK069114.1 gb:AK059177.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5402011/11Tryptophanyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14456.1.S1_at--735--8131Chr01:31397919..31397943 (25 bp)
GGAATTTGACAACCCAGAGAGGCCT
LOC_Os01g54020
Os.14456.1.S1_at--408--8431Chr01:31397899..31397923 (25 bp)
GGCCTGAATGCAACAATCTTCTCTC
LOC_Os01g54020
Os.14456.1.S1_at--378--10791Chr01:31397589..31397613 (25 bp)
TTGATCATCTGCAACCTATCCAGGT
LOC_Os01g54020
Os.14456.1.S1_at--1107--9111Chr01:31397351..31397375 (25 bp)
TGCTGAGATAGCAGACATCACCCTC
LOC_Os01g54020
Os.14456.1.S1_at--742--1671Chr01:31397312..31397336 (25 bp)
AGCCATGGGTTTCTTGCGCAGATAG
LOC_Os01g54020
Os.14456.1.S1_at--322--1271Chr01:31397293..31397317 (25 bp)
AGATAGCATGCGCTTCAACCATCCG
LOC_Os01g54020
Os.14456.1.S1_at--104--8811Chr01:31397231..31397255 (25 bp)
TGTTCGGTCTGTGTTACTTTGTTCC
LOC_Os01g54020
Os.14456.1.S1_at--444--10631Chr01:31397210..31397234 (25 bp)
TTCCCCTTACCATTGGCCTTAAGAT
LOC_Os01g54020
Os.14456.1.S1_at--417--10131Chr01:31397179..31397203 (25 bp)
TATGCACATATTGGCCTTACTAGAT
LOC_Os01g54020
Os.14456.1.S1_at--731--1591Chr01:31397147..31397171 (25 bp)
AGCTCCATTCTCCAAATTTTATAGG
LOC_Os01g54020
Os.14456.1.S1_at--717--9911Chr01:31397098..31397122 (25 bp)
TACGTAGTAGCCTCTTTGTTTCTGG
LOC_Os01g54020
Target Sequence 
GGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCNAGATTATTACAGGGNAAAACTAAAGA
GGAANGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTG
CAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAA
AGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAGCATGCGCTTCAAC
CATCCGGAACATTTCAAAGATTTTTTACGAGGTCAAAAAGTTTTGTTCGGTCTGTGTTACTTTGTTCCCCTTACCATTGG
CCTTAAGATTGTTTTTATGCACATATTGGCCTTACTAGATTTACAAGAGCTCCATTCTCCAAATTTTATAGGAATATCAA
TCGTTTTGCTTGATGNTACGTAGTAGCCTCTTTGTTTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis