Browse Element(s) Details


OsAffx.23784.1.S1_at

Description tigr:9629.m05262
TID=OsAffx.23784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5400011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23784.1.S1_at--719--1051Chr01:31389794..31389818 (25 bp)
AGGGTGGCAGCTTGCTGGCGATTGG
LOC_Os01g54000
OsAffx.23784.1.S1_at--87--3411Chr01:31389801..31389825 (25 bp)
CAGCTTGCTGGCGATTGGGAGGAGC
LOC_Os01g54000
OsAffx.23784.1.S1_at--256--4631Chr01:31389811..31389835 (25 bp)
GCGATTGGGAGGAGCGTGCGGTGCG
LOC_Os01g54000
OsAffx.23784.1.S1_at--15--9151Chr01:31389827..31389851 (25 bp)
TGCGGTGCGGAATCAGCGAACGAAC
LOC_Os01g54000
OsAffx.23784.1.S1_at--1067--3471Chr01:31389829..31389853 (25 bp)
CGGTGCGGAATCAGCGAACGAACTA
LOC_Os01g54000
OsAffx.23784.1.S1_at--603--1631Chr01:31389841..31389865 (25 bp)
AGCGAACGAACTATGCGAAATCCCA
LOC_Os01g54000
OsAffx.23784.1.S1_at--546--4111Chr01:31389842..31389866 (25 bp)
GCGAACGAACTATGCGAAATCCCAG
LOC_Os01g54000
OsAffx.23784.1.S1_at--547--4111Chr01:31389843..31389867 (25 bp)
CGAACGAACTATGCGAAATCCCAGT
LOC_Os01g54000
OsAffx.23784.1.S1_at--928--2571Chr01:31389845..31389869 (25 bp)
AACGAACTATGCGAAATCCCAGTTT
LOC_Os01g54000
OsAffx.23784.1.S1_at--917--5471Chr01:31389848..31389872 (25 bp)
GAACTATGCGAAATCCCAGTTTTAC
LOC_Os01g54000
OsAffx.23784.1.S1_at--970--10051Chr01:31389852..31389876 (25 bp)
TATGCGAAATCCCAGTTTTACCCTT
LOC_Os01g54000
Target Sequence 
AGGGTGGCAGCTTGCTGGCGATTGGGAGGAGCGTGCGGTGCGGAATCAGCGAACGAACTATGCGAAATCCCAGTTTTACC
CTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis