Browse Element(s) Details


Os.37851.1.S1_s_at

Description gb:AK069026.1
DB_XREF= gi:32979050
TID=Os.37851.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peptidase-like protein (P0439E07.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003O13, full insert sequence.
FL= gb:AK069026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5401011/11Transferrin receptor-like dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53980Os.42155.1.S1_at11/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53980Os.40388.2.S1_s_at1/111+31374358..31376236IQ calmodulin-binding motif family protein, expressed
LOC_Os01g53990Os.29826.1.S1_at11/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_x_at9/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g53990Os.29826.2.S1_at6/111+31382462..31385323Pectinesterase family protein, expressed
LOC_Os01g54000OsAffx.23784.1.S1_at11/111+31389764..31390018hypothetical protein
LOC_Os01g54010Os.37851.2.S1_x_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.2.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54010Os.37851.1.S1_s_at11/111+31392001..31396895Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g54020Os.14456.1.S1_at11/111+31397039..31403124Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os01g54030Os.47303.1.S1_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54030Os.47303.1.S1_s_at11/111+31403419..31408115NADP-dependent malic enzyme, putative, expressed
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009640biological_processphotomorphogenesis
GO:0009910biological_processnegative regulation of flower development
GO:0005739cellular_componentmitochondrion
GO:0008233molecular_functionpeptidase activity
GO:0009980molecular_functionglutamate carboxypeptidase activity
GO:0016805molecular_functiondipeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37851.1.S1_s_at--912--1831Chr01:31396494..31396518 (25 bp)
ACGAATACGTCCGAATCCTGGCGAT
LOC_Os01g54010
Os.37851.1.S1_s_at--23--331Chr01:31396498..31396522 (25 bp)
ATACGTCCGAATCCTGGCGATCTGT
LOC_Os01g54010
Os.37851.1.S1_s_at--802--5931Chr01:31396530..31396554 (25 bp)
GAGATTTACAGGATTGCTAGGGTCA
LOC_Os01g54010
Os.37851.1.S1_s_at--317--2131Chr01:31396537..31396561 (25 bp)
ACAGGATTGCTAGGGTCATCAACCA
LOC_Os01g54010
Os.37851.1.S1_s_at--792--3972Chr01:31396612..31396636 (25 bp)
CGGTGGAAATGGAACTATGCTTTCT
LOC_Os01g54010
Os.37851.1.S1_s_at--135--2931Chr01:31396619..31396643 (25 bp)
AATGGAACTATGCTTTCTACTCGGG
LOC_Os01g54010
Os.37851.1.S1_s_at--1007--591Chr01:31396628..31396652 (25 bp)
ATGCTTTCTACTCGGGGGACTGGTA
LOC_Os01g54010
Os.37851.1.S1_s_at--686--8111Chr01:31396644..31396668 (25 bp)
GGACTGGTAATCGTTGACTGCGATA
LOC_Os01g54010
Os.37851.1.S1_s_at--1117--6651Chr01:31396656..31396680 (25 bp)
GTTGACTGCGATAAATGAAATGTTC
LOC_Os01g54010
Os.37851.1.S1_s_at--214--5591Chr01:31396672..31396696 (25 bp)
GAAATGTTCATGTCACTTATTTGGA
LOC_Os01g54010
Os.37851.1.S1_s_at--418--8631Chr01:31396727..31396751 (25 bp)
TGTGGGTTTTAAATCCAAAGAGCGA
LOC_Os01g54010
Target Sequence 
ACGAATACGTCCGAATCCTGGCGATCTGTGCAGCATGAGATTTACAGGATTGCTAGGGTCATCAACCAGGCCTCGCTAGT
CCTAAGTGGAGGGTTAACATAAACAACTGTTGGGGAAGCGGTGGAAATGGAACTATGCTTTCTACTCGGGGGACTGGTAA
TCGTTGACTGCGATAAATGAAATGTTCATGTCACTTATTTGGAACAAAAAAAAGGAAGAAAAATAGAGGAATTTGTGGGT
TTTAAATCCAAAGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37851.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis